Browse Element(s) Details


OsAffx.12064.1.S1_at

Description tigr:9630.m01500
TID=OsAffx.12064.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1598011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15950Os.51944.1.S1_at11/112+9042090..9044994F-box family protein, putative, expressed
LOC_Os02g15960OsAffx.2636.1.S1_at11/112+9051331..9051698hypothetical protein
LOC_Os02g15970Os.18172.1.S1_s_at11/112+9052731..9056389expressed protein
LOC_Os02g15970Os.18172.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970OsAffx.24274.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970Os.14762.2.S1_x_at1/112+9052731..9056389expressed protein
LOC_Os02g15980OsAffx.12064.1.S1_at11/112+9064649..9068427expressed protein
LOC_Os02g15990NANA2+9075212..9079453retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g16000Os.15246.1.S1_at11/112+9082748..9087996GAMYB-binding protein, putative, expressed
LOC_Os02g16010Os.46986.1.S1_at2/112+9089342..9095713retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12064.1.S1_at--52--1311Chr02:9067841..9067865 (25 bp)
AGATGCATGACCATACAGGGCCTCG
LOC_Os02g15980
OsAffx.12064.1.S1_at--233--2131Chr02:9067855..9067879 (25 bp)
ACAGGGCCTCGCAGAAGCTACACAG
LOC_Os02g15980
OsAffx.12064.1.S1_at--613--6071Chr02:9067935..9067959 (25 bp)
GAGTTCACATATGTCTGACGTGCAA
LOC_Os02g15980
OsAffx.12064.1.S1_at--428--851Chr02:9068004..9068028 (25 bp)
ATGGCATGCCACTAGAACTCAAGAA
LOC_Os02g15980
OsAffx.12064.1.S1_at--611--2751Chr02:9068024..9068048 (25 bp)
AAGAAATCGACTCACAGGCCAGCGC
LOC_Os02g15980
OsAffx.12064.1.S1_at--216--5471Chr02:9068051..9068075 (25 bp)
GAACTGTTCCAGCAGACGAGCAGAA
LOC_Os02g15980
OsAffx.12064.1.S1_at--1109--5231Chr02:9068167..9068191 (25 bp)
GAATCCCTTGATCATTACTCGCGAG
LOC_Os02g15980
OsAffx.12064.1.S1_at--512--9911Chr02:9068182..9068206 (25 bp)
TACTCGCGAGCTAGTCTATTTTGTG
LOC_Os02g15980
OsAffx.12064.1.S1_at--1145--1131Chr02:9068242..9068266 (25 bp)
AGTCCATCGCGACAGCTTGATTATC
LOC_Os02g15980
OsAffx.12064.1.S1_at--420--7251Chr02:9068268..9068292 (25 bp)
GTCCGCATCATTGGGCCATGACATA
LOC_Os02g15980
OsAffx.12064.1.S1_at--317--7351Chr02:9068294..9068318 (25 bp)
GTGAATGCTCAACAGGGCTTCTAGT
LOC_Os02g15980
Target Sequence 
AGATGCATGACCATACAGGGCCTCGCAGAAGCTACACAGGCAACATGGATGCACCTAAGAGAAGAACAGAATACTCGCAT
AGTGTAGTTGGTGAGAGTTCACATATGTCTGACGTGCAAATTTATTCACAGTGTAACAAAGCAAGGTCCAGTAGCAGCAG
ACCATGGCATGCCACTAGAACTCAAGAAATCGACTCACAGGCCAGCGCTAGAACTGTTCCAGCAGACGAGCAGAATGAGA
TCCCTTGCCCCCATATTTCTCAAGGATATCACAATGGCACAACATCGAAGAACAACCTGGGGGCTCATGCCGACTGTCTG
GGGCAGGAATCCCTTGATCATTACTCGCGAGCTAGTCTATTTTGTGATGGAACTACTTCGGGGGATTTATGCAATCCACA
CAGTCCATCGCGACAGCTTGATTATCCGTCCGCATCATTGGGCCATGACATAGGTGAATGCTCAACAGGGCTTCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis