Browse Element(s) Details


Os.18172.1.S1_at

Description gb:AK102256.1
DB_XREF= gi:32987465
TID=Os.18172.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033088I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033088I10, full insert sequence.
FL= gb:AK102256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1597010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15939NANA2+9034675..9034982NA
LOC_Os02g15950Os.51944.1.S1_at11/112+9042090..9044994F-box family protein, putative, expressed
LOC_Os02g15960OsAffx.2636.1.S1_at11/112+9051331..9051698hypothetical protein
LOC_Os02g15970Os.18172.1.S1_s_at11/112+9052731..9056389expressed protein
LOC_Os02g15970Os.18172.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970OsAffx.24274.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970Os.14762.2.S1_x_at1/112+9052731..9056389expressed protein
LOC_Os02g15980OsAffx.12064.1.S1_at11/112+9064649..9068427expressed protein
LOC_Os02g15990NANA2+9075212..9079453retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18172.1.S1_at--496--11NONE
ATGACAGCCTGGTGAAAAAGTTGGA
NONE
Os.18172.1.S1_at--434--4711Chr02:9052948..9052972 (25 bp)
GCTGTCAGGTATTGGAGAAGGCTTT
LOC_Os02g15970
Os.18172.1.S1_at--121--5971Chr02:9052934..9052958 (25 bp)
GAGAAGGCTTTACTCGATGCTTAGA
LOC_Os02g15970
Os.18172.1.S1_at--1044--8291Chr02:9052929..9052953 (25 bp)
GGCTTTACTCGATGCTTAGATATAG
LOC_Os02g15970
Os.18172.1.S1_at--376--6512Chr03:27464951..27464975 (25 bp)
GATATAGTCATTATGGTACCTGTTT
NONE
Os.18172.1.S1_at--913--10091Chr02:9052900..9052924 (25 bp)
TATGGTACCTGTTTGTGGTGGAAAA
LOC_Os02g15970
Os.18172.1.S1_at--200--5511Chr02:9052856..9052880 (25 bp)
GAAAATGAACTACTTAGTACTGAAG
LOC_Os02g15970
Os.18172.1.S1_at--754--6131Chr02:9052808..9052832 (25 bp)
GAGGGAACAAGGATATCATATACCA
LOC_Os02g15970
Os.18172.1.S1_at--881--3411Chr02:9052778..9052802 (25 bp)
CAGAAATTGTAACGATCAGAACCAT
LOC_Os02g15970
Os.18172.1.S1_at--1027--7052Chr03:27464809..27464828 (20 bp)
GTAACGATCAGAACCATAAATGGCG
NONE
Os.18172.1.S1_at--210--8351Chr02:9052749..9052773 (25 bp)
GGCGTGAAATCAAACTCCCAAATAA
LOC_Os02g15970
Target Sequence 
ATGACAGCCTGGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTGCCAACTATCCACCAAGG
ACAACTGCAGTTGTAAAATTTTCAGCCAACTTCCAGCTGTCAGGTATTGGAGAAGGCTTTACTCGATGCTTAGATATAGT
CATTATGGTACCTGTTTGTGGTGGAAAATGGTTGGAGTGAAAATCAAGAAAATGAACTACTTAGTACTGAAGTATTATGA
GATATAGTAGGTATGGAGGGAACAAGGATATCATATACCATCATTCAGAAATTGTAACGATCAGAACCATAAATGGCGTG
AAATCAAACTCCCAAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis