Browse Element(s) Details


Os.51944.1.S1_at

Description gb:AK064350.1
DB_XREF= gi:32974368
TID=Os.51944.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071J17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A05, full insert sequence.
FL= gb:AK064350.1 gb:AK073921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1595011/11F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15930Os.51778.1.S1_at11/112+9021452..9023100expressed protein
LOC_Os02g15939NANA2+9034675..9034982NA
LOC_Os02g15950Os.51944.1.S1_at11/112+9042090..9044994F-box family protein, putative, expressed
LOC_Os02g15960OsAffx.2636.1.S1_at11/112+9051331..9051698hypothetical protein
LOC_Os02g15970Os.18172.1.S1_s_at11/112+9052731..9056389expressed protein
LOC_Os02g15970Os.18172.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970OsAffx.24274.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970Os.14762.2.S1_x_at1/112+9052731..9056389expressed protein
LOC_Os02g15980OsAffx.12064.1.S1_at11/112+9064649..9068427expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51944.1.S1_at--862--8151Chr02:9044416..9044440 (25 bp)
GGAAATGGTCACTGAAGAGCCCTGT
LOC_Os02g15950
Os.51944.1.S1_at--736--1331Chr02:9044446..9044470 (25 bp)
AGAGGTTTCCTCTGCAGCTGTTTAC
LOC_Os02g15950
Os.51944.1.S1_at--243--1951Chr02:9044469..9044493 (25 bp)
ACTGGTTTCTCTTTTGAGCCTAGGC
LOC_Os02g15950
Os.51944.1.S1_at--975--8331Chr02:9044491..9044515 (25 bp)
GGCTGGACATTGCTTCCTAGTTTTA
LOC_Os02g15950
Os.51944.1.S1_at--900--3631Chr02:9044526..9044550 (25 bp)
CTTCCACGGGAATTCTTGCATTATT
LOC_Os02g15950
Os.51944.1.S1_at--94--4631Chr02:9044668..9044692 (25 bp)
GCGTCTAAACTTCCCTGTTTCATTT
LOC_Os02g15950
Os.51944.1.S1_at--1104--10311Chr02:9044766..9044790 (25 bp)
TTTCTTTATTCTTATGTTGCCTGCA
LOC_Os02g15950
Os.51944.1.S1_at--199--2331Chr02:9044794..9044818 (25 bp)
AAAGTGCCACTTCAGATGTCCCAAA
LOC_Os02g15950
Os.51944.1.S1_at--775--6811Chr02:9044895..9044919 (25 bp)
GTTTTATTACGACACCACTACATGC
LOC_Os02g15950
Os.51944.1.S1_at--836--1511Chr02:9044936..9044960 (25 bp)
AGCAGAGTCCTTTGTTGTTGAGTCA
LOC_Os02g15950
Os.51944.1.S1_at--492--7011Chr02:9044961..9044985 (25 bp)
GTACTTGAAGCAGAGTCCTTGCTCT
LOC_Os02g15950
Target Sequence 
GGAAATGGTCACTGAAGAGCCCTGTGACGAAGAGGTTTCCTCTGCAGCTGTTTACTGGTTTCTCTTTTGAGCCTAGGCTG
GACATTGCTTCCTAGTTTTATTTTGTTTCACTTCCACGGGAATTCTTGCATTATTTGCCTGGTTTGGAGTTACCAAGTGA
AGAGATGATGTCATTGGAAGCCATTCGAGAAAGTGTTTCAGGTTTTATAGATCTATTCTATTTATTGCTGAGTATATCTT
CTAATTGAAAGGGCGTCTAAACTTCCCTGTTTCATTTTTGTTGATTTGATGGTTGGATAATAGAGGGAGGGATGATGCCA
TACACAAGAACAATTCTTGCTGAATTGTGTTTTCTTTATTCTTATGTTGCCTGCAAACAAAGTGCCACTTCAGATGTCCC
AAACCTAAAAGATTGTTACTTTCTTGATTTATAGTAGTCATTTGCGTTTGGGGTCCCCGCTGCTACTGATTTATNNTTTG
TTTTATTACGACACCACTACATGCAAACATCTGAACTTGAAGCAGAGTCCTTTGTTGTTGAGTCAGTACTTGAAGCAGAG
TCCTTGCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis