Browse Element(s) Details


OsAffx.2636.1.S1_at

Description tigr:9630.m01498
TID=OsAffx.2636.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1596011/11hypothetical protein
LOC_Os06g419302/11zinc-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15939NANA2+9034675..9034982NA
LOC_Os02g15950Os.51944.1.S1_at11/112+9042090..9044994F-box family protein, putative, expressed
LOC_Os02g15960OsAffx.2636.1.S1_at11/112+9051331..9051698hypothetical protein
LOC_Os02g15970Os.18172.1.S1_s_at11/112+9052731..9056389expressed protein
LOC_Os02g15970Os.18172.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970OsAffx.24274.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970Os.14762.2.S1_x_at1/112+9052731..9056389expressed protein
LOC_Os02g15980OsAffx.12064.1.S1_at11/112+9064649..9068427expressed protein
LOC_Os02g15990NANA2+9075212..9079453retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2636.1.S1_at--330--9491Chr02:9051391..9051519 (25 bp)
TCTGCTGCCGCCAAGGATTACGAGA
LOC_Os02g15960
OsAffx.2636.1.S1_at--506--9111Chr02:9051393..9051521 (25 bp)
TGCTGCCGCCAAGGATTACGAGAAG
LOC_Os02g15960
OsAffx.2636.1.S1_at--141--9171Chr02:9051396..9051524 (25 bp)
TGCCGCCAAGGATTACGAGAAGAAA
LOC_Os02g15960
OsAffx.2636.1.S1_at--1143--5071Chr02:9051535..9051559 (25 bp)
GCACTGATGCGGCAAACAAAGCTGC
LOC_Os02g15960
OsAffx.2636.1.S1_at--815--611Chr02:9051541..9051565 (25 bp)
ATGCGGCAAACAAAGCTGCAGGATC
LOC_Os02g15960
OsAffx.2636.1.S1_at--285--9051Chr02:9051557..9051581 (25 bp)
TGCAGGATCTGATTCTGACGACGAT
LOC_Os02g15960
OsAffx.2636.1.S1_at--557--5011Chr02:9051558..9051582 (25 bp)
GCAGGATCTGATTCTGACGACGATG
LOC_Os02g15960
OsAffx.2636.1.S1_at--549--273Chr06:25160086..25160108 (23 bp)
ATATGTGTTTTGCTTATCCGTTTGT
LOC_Os06g41930
OsAffx.2636.1.S1_at--231--792Chr02:9051625..9051649 (25 bp)
ATGTGTTTTGCTTATCCGTTTGTTT
LOC_Os02g15960
OsAffx.2636.1.S1_at--799--6832Chr06:25160089..25160193 (25 bp)
GTGTTTTGCTTATCCGTTTGTTTGC
LOC_Os06g41930
OsAffx.2636.1.S1_at--955--9071Chr02:9051633..9051657 (25 bp)
TGCTTATCCGTTTGTTTGCAATGGC
LOC_Os02g15960
Target Sequence 
TCTGCTGCCGCCAAGGATTACGAGAAGAAAGATGAGGCTGGCACTGATGCGGCAAACAAAGCTGCAGGATCTGATTCTGA
CGACGATGACAAGCAGGGGACACGGCAAAAAGAAGGAATATTTGAAAGATATGTGTTTTGCTTATCCGTTTGTTTGCAAT
GGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2636.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis