Browse Element(s) Details


OsAffx.24274.1.S1_at

Description tigr:9630.m01499
TID=OsAffx.24274.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1597010/11expressed protein
LOC_Os11g479301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15939NANA2+9034675..9034982NA
LOC_Os02g15950Os.51944.1.S1_at11/112+9042090..9044994F-box family protein, putative, expressed
LOC_Os02g15960OsAffx.2636.1.S1_at11/112+9051331..9051698hypothetical protein
LOC_Os02g15970Os.18172.1.S1_s_at11/112+9052731..9056389expressed protein
LOC_Os02g15970Os.18172.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970OsAffx.24274.1.S1_at10/112+9052731..9056389expressed protein
LOC_Os02g15970Os.14762.2.S1_x_at1/112+9052731..9056389expressed protein
LOC_Os02g15980OsAffx.12064.1.S1_at11/112+9064649..9068427expressed protein
LOC_Os02g15990NANA2+9075212..9079453retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24274.1.S1_at--1051--10352Chr11:28344943..28345009 (25 bp)
TTTTACAAAACAATCATTGGCCTTG
LOC_Os11g47930
OsAffx.24274.1.S1_at--903--9191Chr02:9054079..9054302 (25 bp)
TGCCAACTTGCAGTGGTCATGGATA
LOC_Os02g15970
OsAffx.24274.1.S1_at--965--4371Chr02:9054077..9054300 (25 bp)
CCAACTTGCAGTGGTCATGGATATG
LOC_Os02g15970
OsAffx.24274.1.S1_at--419--2151Chr02:9053711..9054033 (25 bp)
ACAGCCTGCTGGTCAATAACAAAAG
LOC_Os02g15970
OsAffx.24274.1.S1_at--741--3891Chr02:9053703..9053727 (25 bp)
CTGGTCAATAACAAAAGCATTCGAT
LOC_Os02g15970
OsAffx.24274.1.S1_at--891--2191Chr02:9053693..9053717 (25 bp)
ACAAAAGCATTCGATGTGCCATACT
LOC_Os02g15970
OsAffx.24274.1.S1_at--903--2331Chr02:9053690..9053714 (25 bp)
AAAGCATTCGATGTGCCATACTAAT
LOC_Os02g15970
OsAffx.24274.1.S1_at--957--1531Chr02:9053688..9053712 (25 bp)
AGCATTCGATGTGCCATACTAATTA
LOC_Os02g15970
OsAffx.24274.1.S1_at--550--9371Chr02:9053683..9053707 (25 bp)
TCGATGTGCCATACTAATTAAAAAT
LOC_Os02g15970
OsAffx.24274.1.S1_at--614--2391Chr02:9053669..9053692 (24 bp)
AATTAAAAATATGACCACAAAGGTG
LOC_Os02g15970
OsAffx.24274.1.S1_at--617--9211Chr02:9052540..9052976 (25 bp)
TCCAGCTGTCAGGTAAACTATATAG
NONE
Target Sequence 
TTTTACAAAACAATCATTGGCCTTGCGCCCTTGCCTTTTGATATCAACTATATCTCTATAGCTTGCTCTCCTTTATGTGA
ACAGGAGAAATATCACCCTTACTACCCTCAAGCTGCCGTTATGTGCCAACTTGCAGTGGTCATGGATATGATCCCCCAAG
GTGGTTTGATGAGGAAGAGCTACCAAAGCAATGACAGCCTGCTGGTCAATAACAAAAGCATTCGATGTGCCATACTAATT
AAAAATATGACCACAAAGGTGAAAAAGTTGGACTTGTATGCAGCTCTGAAGAATATAACATGCATCTTTGCCAACTATCC
ACCAAGGACAACTGCAGTTGTAAAATTTTCAGCCAACTTCCAGCTGTCAGGTAAACTATATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24274.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis