Browse Element(s) Details


Os.51778.1.S1_at

Description gb:AK063689.1
DB_XREF= gi:32973707
TID=Os.51778.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-F07, full insert sequence.
FL= gb:AK063689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1593011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15900Os.20857.1.S1_at11/112+9005262..900748450S ribosomal protein L21, chloroplast precursor, putative, expressed
LOC_Os02g15910OsAffx.2635.1.S1_at11/112+9009848..9010538hypothetical protein
LOC_Os02g15920OsAffx.24273.1.S1_at11/112+9011714..9016578hypothetical protein
LOC_Os02g15930Os.51778.1.S1_at11/112+9021452..9023100expressed protein
LOC_Os02g15939NANA2+9034675..9034982NA
LOC_Os02g15950Os.51944.1.S1_at11/112+9042090..9044994F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006915biological_processapoptosis
GO:0042981biological_processregulation of apoptosis
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51778.1.S1_at--124--2811Chr02:9022534..9022558 (25 bp)
AAGATGCTAGTGTTCAGACAGAGAA
LOC_Os02g15930
Os.51778.1.S1_at--657--4911Chr02:9022584..9022608 (25 bp)
GCTTCTGCAACTCCTGATGGTATGA
LOC_Os02g15930
Os.51778.1.S1_at--299--5491Chr02:9022616..9022640 (25 bp)
GAACAAGGTTGCTGAAGAAACTACT
LOC_Os02g15930
Os.51778.1.S1_at--431--2431Chr02:9022726..9022750 (25 bp)
AAAACCTTCTTGCATCTGGCAGCGA
LOC_Os02g15930
Os.51778.1.S1_at--1158--5051Chr02:9022744..9022768 (25 bp)
GCAGCGATCAGATGGGAGTTATCAC
LOC_Os02g15930
Os.51778.1.S1_at--241--371Chr02:9022764..9022788 (25 bp)
ATCACGGAACTGAGCGAGAAGGTCA
LOC_Os02g15930
Os.51778.1.S1_at--59--4131Chr02:9022792..9022816 (25 bp)
CGCTTGAGCGTAAGCTGGCGCGCAA
LOC_Os02g15930
Os.51778.1.S1_at--721--2871Chr02:9022832..9022856 (25 bp)
AAGGGTACACAGACCAACCAGGCAA
LOC_Os02g15930
Os.51778.1.S1_at--884--5151Chr02:9022857..9022881 (25 bp)
GCAACGGCCAAAGTCCACTGAAGAT
LOC_Os02g15930
Os.51778.1.S1_at--894--4811Chr02:9023033..9023057 (25 bp)
GCTCATGTAGCCTAGTTTAACACGG
LOC_Os02g15930
Os.51778.1.S1_at--1011--6051Chr02:9023076..9023100 (25 bp)
GAGTTGAATATTTTCCTTGTGTGCT
LOC_Os02g15930
Target Sequence 
AAGATGCTAGTGTTCAGACAGAGAACATGGCATCTGAAGAAGCTTCCTTGGCTTCTGCAACTCCTGATGGTATGAAAGAT
GAGAACAAGGTTGCTGAAGAAACTACTTCAGATTATGNGACTCCTTATAGTTCAAAGAGTGACAATGAGAACAAACTTGC
TGAAGAAAACCAGAAGCTGAAAGAGATGCTGCAAAACCTTCTTGCATCTGGCAGCGATCAGATGGGAGTTATCACGGAAC
TGAGCGAGAAGGTCAAGACGCTTGAGCGTAAGCTGGCGCGCAAGAAGAGGCCAAAGGTAAGGGTACACAGACCAACCAGG
CAAGCAACGGCCAAAGTCCACTGAAGATGATCTCTGAAGTTTTGAGNTTGNGNTTATGGATTCCATGTAGCTGNTTGTAA
CCATGCCTGTATGAATGNACTACTTGNAATGNACACATGAGTGNTGNGGNACTATGCATTGGANAATGTAAGATCATGCC
TGNGNTGGGNCCTTGNAATGCTCATGTAGCCTAGTTTAACACGGAGNATCAATGTCATAAGGGAGTTGAATATTTTCCTT
GTGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis