Browse Element(s) Details


OsAffx.2635.1.S1_at

Description tigr:9630.m01493
TID=OsAffx.2635.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1591011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15880Os.10875.2.S1_x_at10/112+8984540..8989569expressed protein
LOC_Os02g15880Os.10875.2.S1_at7/112+8984540..8989569expressed protein
LOC_Os02g15890OsAffx.12063.1.S1_at11/112+8992665..8994446hypothetical protein
LOC_Os02g15890OsAffx.12063.1.S1_x_at11/112+8992665..8994446hypothetical protein
LOC_Os02g15900Os.20857.1.S1_at11/112+9005262..900748450S ribosomal protein L21, chloroplast precursor, putative, expressed
LOC_Os02g15910OsAffx.2635.1.S1_at11/112+9009848..9010538hypothetical protein
LOC_Os02g15920OsAffx.24273.1.S1_at11/112+9011714..9016578hypothetical protein
LOC_Os02g15930Os.51778.1.S1_at11/112+9021452..9023100expressed protein
LOC_Os02g15939NANA2+9034675..9034982NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2635.1.S1_at--20--4971Chr02:9009913..9009937 (25 bp)
GCATCCACAAAGAAGAGGTTCGCTG
LOC_Os02g15910
OsAffx.2635.1.S1_at--262--2791Chr02:9009925..9009949 (25 bp)
AAGAGGTTCGCTGGCGGTCATTGAC
LOC_Os02g15910
OsAffx.2635.1.S1_at--893--7131Chr02:9009941..9009965 (25 bp)
GTCATTGACTGCGATGGATCCAACA
LOC_Os02g15910
OsAffx.2635.1.S1_at--495--10431Chr02:9010371..9010395 (25 bp)
TTAGTCGATGACAGAACCCCAAAAG
LOC_Os02g15910
OsAffx.2635.1.S1_at--941--2751Chr02:9010393..9010417 (25 bp)
AAGACTCATGCAAGTTCACCATCAC
LOC_Os02g15910
OsAffx.2635.1.S1_at--335--8431Chr02:9010421..9010445 (25 bp)
TGGCCCCTGTTTTCCAATGTTGTGC
LOC_Os02g15910
OsAffx.2635.1.S1_at--1092--6791Chr02:9010429..9010453 (25 bp)
GTTTTCCAATGTTGTGCCTTACTGC
LOC_Os02g15910
OsAffx.2635.1.S1_at--838--10811Chr02:9010440..9010464 (25 bp)
TTGTGCCTTACTGCCACGCGCAAGT
LOC_Os02g15910
OsAffx.2635.1.S1_at--554--4591Chr02:9010457..9010481 (25 bp)
GCGCAAGTCGCTGCAATATCTACTG
LOC_Os02g15910
OsAffx.2635.1.S1_at--481--251Chr02:9010472..9010496 (25 bp)
ATATCTACTGGCAAGTGCACTCCTG
LOC_Os02g15910
OsAffx.2635.1.S1_at--501--2851Chr02:9010484..9010508 (25 bp)
AAGTGCACTCCTGAGGGATGCCAAT
LOC_Os02g15910
Target Sequence 
GCATCCACAAAGAAGAGGTTCGCTGGCGGTCATTGACTGCGATGGATCCAACAGCGATATCAAGATGAAACAAGGTTATA
TGTCGATGAAGGCATTAGTCGATGACAGAACCCCAAAAGACTCATGCAAGTTCACCATCACACCTGGCCCCTGTTTTCCA
ATGTTGTGCCTTACTGCCACGCGCAAGTCGCTGCAATATCTACTGGCAAGTGCACTCCTGAGGGATGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2635.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis