Browse Element(s) Details


Os.10875.2.S1_x_at

Description gb:AK068099.1
DB_XREF= gi:32978117
TID=Os.10875.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10875 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134G20, full insert sequence.
FL= gb:AK068099.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1588010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15850OsAffx.2633.1.S1_at11/112+8966532..8967177hypothetical protein
LOC_Os02g15860Os.10556.1.S1_at11/112+8973639..8974476expressed protein
LOC_Os02g15870Os.24599.1.A1_at10/112+8976765..8981138Molybdenum cofactor biosynthesis protein 1 B, putative, expressed
LOC_Os02g15870Os.51870.1.S1_at1/112+8976765..8981138Molybdenum cofactor biosynthesis protein 1 B, putative, expressed
LOC_Os02g15880Os.10875.2.S1_x_at10/112+8984540..8989569expressed protein
LOC_Os02g15880Os.10875.2.S1_at7/112+8984540..8989569expressed protein
LOC_Os02g15890OsAffx.12063.1.S1_at11/112+8992665..8994446hypothetical protein
LOC_Os02g15890OsAffx.12063.1.S1_x_at11/112+8992665..8994446hypothetical protein
LOC_Os02g15900Os.20857.1.S1_at11/112+9005262..900748450S ribosomal protein L21, chloroplast precursor, putative, expressed
LOC_Os02g15910OsAffx.2635.1.S1_at11/112+9009848..9010538hypothetical protein
LOC_Os02g15920OsAffx.24273.1.S1_at11/112+9011714..9016578hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10875.2.S1_x_at--190--1551Chr02:8985080..8985104 (25 bp)
AGCATTTTCTCGCATCCTATGGAGG
LOC_Os02g15880
Os.10875.2.S1_x_at--112--10091Chr02:8985063..8985087 (25 bp)
TATGGAGGCTCCTCGTCGTGTGGCA
LOC_Os02g15880
Os.10875.2.S1_x_at--777--7331Chr02:8985017..8985041 (25 bp)
GTGCATGGTGGCAACATCCTGTCAA
LOC_Os02g15880
Os.10875.2.S1_x_at--833--9351Chr02:8984925..8984949 (25 bp)
TCGCAACTCGAAATCCACCAATGGC
LOC_Os02g15880
Os.10875.2.S1_x_at--922--1691Chr02:8984909..8984933 (25 bp)
ACCAATGGCATGGTGACCGGTAACT
LOC_Os02g15880
Os.10875.2.S1_x_at--724--4811Chr02:8984840..8984864 (25 bp)
GCTCTCTCCATTTCAGTAAGCATAT
LOC_Os02g15880
Os.10875.2.S1_x_at--33--7071Chr02:8984825..8984849 (25 bp)
GTAAGCATATGCTTCGAACCATCTG
LOC_Os02g15880
Os.10875.2.S1_x_at--812--1951Chr02:8984743..8984767 (25 bp)
ACTGTTGTGTCCTGATTTGTTTAGC
LOC_Os02g15880
Os.10875.2.S1_x_at--794--4751Chr02:8984617..8984641 (25 bp)
GCTGAATTTCAGGTCTTGTACTGAA
LOC_Os02g15880
Os.10875.2.S1_x_at--117--3071Chr02:8984543..8984567 (25 bp)
AATCTATGTGACTGACATGTTTGAA
LOC_Os02g15880
Os.10875.2.S1_x_at--326--8971Chr02:8984522..8984546 (25 bp)
TGAAATTATCATGCTCTTGCTGCTG
NONE
Target Sequence 
AGCATTTTCTCGCATCCTATGGAGGCTCCTCGTCGTGTGGCAGCTCNAGCTGACGAGGGTCGGGTGCATGGTGGCAACAT
CCTGTCAATGTTTGCAAATGGCATGAGTTTGGGGANGCATCCCGCCAACCAAGCAGAGGCNAGCACCTNTGCACCTCGCA
ACTCGAAATCCACCAATGGCATGGTGACCGGTAACTCTGCGGNGCGGGGCAGCTGGCTGTAGAGCCTTGNACCGNCTNNT
GCTCTCTCCATTTCAGTAAGCATATGCTTCGAACCATCTGNCAAGTGCCTTCTCTTCNTAATCCTTCGGGTGTGAAAACT
ATGGTGTGATTGTGTGAACTGTTGTGTCCTGATTTGTTTAGCAGTGTTGTGAACTTGTGATATATTATTAATCGTTTGTG
CTTTGTAAAATGTAATAATCACCTGTGTGAGATAAATAAAAGGGGGAAGGTTACACATTNAGATGCTGAATTTCAGGTCT
TGTACTGAAGNTCTGCTGTCACCTCCAAAATTTGNCCTGTGATAGTCATGTTCTAATAAATCTATGTGACTGACATGTTT
GAAATTATCATGCTCTTGCTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10875.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis