Browse Element(s) Details


Os.51870.1.S1_at

Description gb:AK064130.1
DB_XREF= gi:32974148
TID=Os.51870.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-F03, full insert sequence.
FL= gb:AK064130.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3143011/11BTB/POZ domain containing protein, expressed
LOC_Os02g158701/11Molybdenum cofactor biosynthesis protein 1 B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31410Os.6824.1.S1_at11/118+19294618..19299848Sulfate transporter 1.2, putative, expressed
LOC_Os08g31420Os.51880.1.S1_at11/118+19303216..19304628BTB/POZ domain containing protein, expressed
LOC_Os08g31430Os.51870.1.S1_at11/118+19308410..19309802BTB/POZ domain containing protein, expressed
LOC_Os08g31440Os.52625.1.S1_at10/118+19312977..19314460expressed protein
LOC_Os08g31450OsAffx.5995.1.S1_at10/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.19006.1.S1_at5/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.29576.5.S1_at1/118+19315445..19319160MATH domain containing protein
LOC_Os08g31460Os.39989.1.S1_s_at2/118+19323595..19327127tRNA modification GTPase TrmE family protein
LOC_Os08g31470Os.5792.1.S1_a_at11/118+19331101..19336339expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006777biological_processMo-molybdopterin cofactor biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003824molecular_functioncatalytic activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51870.1.S1_at--459--5851Chr08:19308915..19308939 (25 bp)
GAGCCACCGCGACAAGCGTCCTAAG
LOC_Os08g31430
Os.51870.1.S1_at--703--2591Chr08:19308902..19308926 (25 bp)
AAGCGTCCTAAGCTCAGCGACGTCG
LOC_Os08g31430
Os.51870.1.S1_at--194--3931Chr08:19308823..19308847 (25 bp)
CGGCGGCCGACAGATTTGACCTGGA
LOC_Os08g31430
Os.51870.1.S1_at--761--8111Chr08:19308612..19308636 (25 bp)
GGACTGCCCCTCACTTCTGATCGAG
LOC_Os08g31430
Os.51870.1.S1_at--888--1411Chr08:19308580..19308604 (25 bp)
AGAACTTTGGAAAACGCAGCGAGGC
LOC_Os08g31430
Os.51870.1.S1_at--950--6211Chr08:19308560..19308584 (25 bp)
GAGGCCGATGAGGAATAATACAATA
LOC_Os08g31430
Os.51870.1.S1_at--324--10212Chr08:19308534..19308558 (25 bp)
TATTTCTGTATTATCATTGGACAAG
LOC_Os08g31430
Os.51870.1.S1_at--910--9771Chr08:19308505..19308529 (25 bp)
TTAGTTTTCGAACAATGATCTTGGA
LOC_Os08g31430
Os.51870.1.S1_at--81--2331Chr08:19308476..19308500 (25 bp)
AAAGTGGCACGTACTGTGCAATCAT
LOC_Os08g31430
Os.51870.1.S1_at--918--7331Chr08:19308461..19308485 (25 bp)
GTGCAATCATTTTTTAATCCCTTGT
LOC_Os08g31430
Os.51870.1.S1_at--259--3051Chr08:19308446..19308470 (25 bp)
AATCCCTTGTATCTGGCTTGTAGTA
LOC_Os08g31430
Target Sequence 
GAGCCACCGCGACAAGCGTCCTAAGCTCAGCGACGTCGCGGCCGCCAGCTGCTCGGAAGAAGAGGTGAGAGTGATGATCG
GAGAGCGGCTCGCGGCGGCCGACAGATTTGACCTGGAGAGGATGAGGCTGCTGTGCGAGGACGCGCTGTGGGAGACCATC
GACGTGGCGAACGCGGCGGCGACGCTGCGGCTGGCTGACCGGCACCATTGCCCGCAGCTCAAGGAGCTCTGCATGGAGTA
CATCGCCTCGGCTGGGGTGTTGGCGGCCGTGATGACAACCGAGGGGTTCAGGGAGCTCAAGCTGGACTGCCCCTCACTTC
TGATCGAGATCCTGGAGAACTTTGGAAAACGCAGCGAGGCCGATGAGGAATAATACAATATTATTTCTGTATTATCATTG
GACAAGTAATTTAGTTTTCGAACAATGATCTTGGAATGAAAAGTGGCACGTACTGTGCAATCATTTTTTAATCCCTTGTA
TCTGGCTTGTAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis