Browse Element(s) Details


Os.52625.1.S1_at

Description gb:AK068370.1
DB_XREF= gi:32978388
TID=Os.52625.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52625 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013150N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013150N18, full insert sequence.
FL= gb:AK068370.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3144010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31410Os.6824.1.S1_at11/118+19294618..19299848Sulfate transporter 1.2, putative, expressed
LOC_Os08g31420Os.51880.1.S1_at11/118+19303216..19304628BTB/POZ domain containing protein, expressed
LOC_Os08g31430Os.51870.1.S1_at11/118+19308410..19309802BTB/POZ domain containing protein, expressed
LOC_Os08g31440Os.52625.1.S1_at10/118+19312977..19314460expressed protein
LOC_Os08g31450OsAffx.5995.1.S1_at10/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.19006.1.S1_at5/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.29576.5.S1_at1/118+19315445..19319160MATH domain containing protein
LOC_Os08g31460Os.39989.1.S1_s_at2/118+19323595..19327127tRNA modification GTPase TrmE family protein
LOC_Os08g31470Os.5792.1.S1_a_at11/118+19331101..19336339expressed protein
LOC_Os08g31480OsAffx.29453.1.S1_at11/118+19339110..19341220hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52625.1.S1_at--351--3751Chr08:19313970..19313994 (25 bp)
CTCAGATCCGTATGGGAGGAAGCCA
LOC_Os08g31440
Os.52625.1.S1_at--1089--5851Chr08:19314016..19314040 (25 bp)
GAGCGGCGAGGGTGTCTTCCCCTCC
LOC_Os08g31440
Os.52625.1.S1_at--279--8011Chr08:19314064..19314088 (25 bp)
GGAGGCCTGCAGTGGTGGAGCGTCA
LOC_Os08g31440
Os.52625.1.S1_at--369--9531Chr08:19314168..19314192 (25 bp)
TCTCAGATCTGGATGGGAGGCCTGT
LOC_Os08g31440
Os.52625.1.S1_at--1157--911Chr08:19314233..19314257 (25 bp)
AGTCCAACGGCGGTGTCCGTGCCTT
LOC_Os08g31440
Os.52625.1.S1_at--345--4671Chr08:19314344..19314368 (25 bp)
GCGTGTGGCTTCGATGAGAATAGCT
LOC_Os08g31440
Os.52625.1.S1_at--290--6311Chr08:19314356..19314380 (25 bp)
GATGAGAATAGCTCGTCCACGGTGG
LOC_Os08g31440
Os.52625.1.S1_at--205--3971Chr08:19314375..19314399 (25 bp)
CGGTGGCTTCGGCAACCTCCAATGT
LOC_Os08g31440
Os.52625.1.S1_at--983--3931Chr08:19314384..19314408 (25 bp)
CGGCAACCTCCAATGTCACTAGCAA
LOC_Os08g31440
Os.52625.1.S1_at--1106--5611Chr08:19314417..19314441 (25 bp)
GACAACGTAGATGTTTGCATGCTGA
LOC_Os08g31440
Os.52625.1.S1_at--791--8871Chr08:19314458..19314482 (25 bp)
TGATGTAGTGATGTTGGATGCCAAT
NONE
Target Sequence 
CTCAGATCCGTATGGGAGGAAGCCAGAGGTGGTGGCGCGGCAGAGGGAGCGGCGAGGGTGTCTTCCCCTCCCCTCCCTCT
CTTAGATCCGGATGGGAGGCCTGCAGTGGTGGAGCGTCAGAAGGAGCGGCGGCGGGATGGGAGGAGTCCGACGGCGGTGG
TGCGGCGGCGGCGTCCCTGCCTTCCCCTCCCCTCCCTCTCTCAGATCTGGATGGGAGGCCTGTGGCGGTCACGCGTCAGT
GGGAGCGGCCGTGGGATGGGAGGAGTCCAACGGCGGTGTCCGTGCCTTCCCCTCCCCTTCCTCTCTCAGATCCGGATGGG
AAGGGCAGCGGTGGTGCATCAGAGGGAGCGGCGGCGGGATGGGAGGAGACGGCGGCGTGTGGCTTCGATGAGAATAGCTC
GTCCACGGTGGCTTCGGCAACCTCCAATGTCACTAGCAATGACGATAGACAACGTAGATGTTTGCATGCTGAAAATGCAG
TGAGAAGTTGATGTAGTGATGTTGGATGCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis