Browse Element(s) Details


Os.51880.1.S1_at

Description gb:AK064160.1
DB_XREF= gi:32974178
TID=Os.51880.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-F10, full insert sequence.
FL= gb:AK064160.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3142011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g31400Os.26886.1.S1_x_at6/118+19278474..19281819transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g31400Os.26886.3.S1_x_at4/118+19278474..19281819transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g31410Os.6824.1.S1_at11/118+19294618..19299848Sulfate transporter 1.2, putative, expressed
LOC_Os08g31420Os.51880.1.S1_at11/118+19303216..19304628BTB/POZ domain containing protein, expressed
LOC_Os08g31430Os.51870.1.S1_at11/118+19308410..19309802BTB/POZ domain containing protein, expressed
LOC_Os08g31440Os.52625.1.S1_at10/118+19312977..19314460expressed protein
LOC_Os08g31450OsAffx.5995.1.S1_at10/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.19006.1.S1_at5/118+19315445..19319160MATH domain containing protein
LOC_Os08g31450OsAffx.29576.5.S1_at1/118+19315445..19319160MATH domain containing protein
LOC_Os08g31460Os.39989.1.S1_s_at2/118+19323595..19327127tRNA modification GTPase TrmE family protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51880.1.S1_at--259--9651Chr08:19303549..19303573 (25 bp)
TCAGGGCGTTGTGCATGGAGTACAT
LOC_Os08g31420
Os.51880.1.S1_at--828--971Chr08:19303477..19303501 (25 bp)
AGGAGCTCAAGGTGGCATGTCCCTC
LOC_Os08g31420
Os.51880.1.S1_at--95--6331Chr08:19303423..19303447 (25 bp)
GATGCTGCCGTTCGGAATAAACGCC
LOC_Os08g31420
Os.51880.1.S1_at--622--3091Chr08:19303408..19303432 (25 bp)
AATAAACGCCTGAACGATGCTCTCC
LOC_Os08g31420
Os.51880.1.S1_at--707--6331Chr08:19303393..19303417 (25 bp)
GATGCTCTCCCTGTTTGTTTACTTT
LOC_Os08g31420
Os.51880.1.S1_at--998--6331Chr08:19303350..19303374 (25 bp)
GATGCTCTCTATTCGTAATCGGAAT
LOC_Os08g31420
Os.51880.1.S1_at--552--3951Chr08:19303331..19303355 (25 bp)
CGGAATTGCTATATGTCTGGCGACA
LOC_Os08g31420
Os.51880.1.S1_at--984--4592Chr08:19303312..19303336 (25 bp)
GCGACAGATTTTTGAGTCCCATATC
LOC_Os08g31420
Os.51880.1.S1_at--671--6571Chr08:19303252..19303276 (25 bp)
GATTCGTGTTGCATTCATGCCGACT
LOC_Os08g31420
Os.51880.1.S1_at--449--3531Chr08:19303237..19303261 (25 bp)
CATGCCGACTCCATCATAATCGATT
LOC_Os08g31420
Os.51880.1.S1_at--1145--9752Chr08:19303221..19303245 (25 bp)
TAATCGATTTGAGCCGTGTTTTCCA
LOC_Os08g31420
Target Sequence 
TCAGGGCGTTGTGCATGGAGTACATCGCCTCGCCCGGCATGTTGGCGGCCGTGATGGCAACAAAGGGGTTCAAGGAGCTC
AAGGTGGCATGTCCCTCTCTTCTCATCGAGATCCTGGAGAAGGTTGGATGCTGCCGTTCGGAATAAACGCCTGAACGATG
CTCTCCCTGTTTGTTTACTTTCCTTTGGAGTAATTTTACGATGCTCTCTATTCGTAATCGGAATTGCTATATGTCTGGCG
ACAGATTTTTGAGTCCCATATCTTGCAGATTGATTTATGTATGTTGGATGGTGTCAAGATTCGTGTTGCATTCATGCCGA
CTCCATCATAATCGATTTGAGCCGTGTTTTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis