Browse Element(s) Details


Os.24599.1.A1_at

Description gb:AK100565.1
DB_XREF= gi:32985774
TID=Os.24599.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.24599 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023104J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104J24, full insert sequence.
FL= gb:AK100565.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1587010/11Molybdenum cofactor biosynthesis protein 1 B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15840OsAffx.12062.1.S1_at11/112+8956012..8956689hypothetical protein
LOC_Os02g15850OsAffx.2633.1.S1_at11/112+8966532..8967177hypothetical protein
LOC_Os02g15860Os.10556.1.S1_at11/112+8973639..8974476expressed protein
LOC_Os02g15870Os.24599.1.A1_at10/112+8976765..8981138Molybdenum cofactor biosynthesis protein 1 B, putative, expressed
LOC_Os02g15870Os.51870.1.S1_at1/112+8976765..8981138Molybdenum cofactor biosynthesis protein 1 B, putative, expressed
LOC_Os02g15880Os.10875.2.S1_x_at10/112+8984540..8989569expressed protein
LOC_Os02g15880Os.10875.2.S1_at7/112+8984540..8989569expressed protein
LOC_Os02g15890OsAffx.12063.1.S1_at11/112+8992665..8994446hypothetical protein
LOC_Os02g15890OsAffx.12063.1.S1_x_at11/112+8992665..8994446hypothetical protein
LOC_Os02g15900Os.20857.1.S1_at11/112+9005262..900748450S ribosomal protein L21, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006777biological_processMo-molybdopterin cofactor biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24599.1.A1_at--917--2311Chr02:8979149..8979173 (25 bp)
AAAGTGTGCTTATTTGGCCCCTCAG
LOC_Os02g15870
Os.24599.1.A1_at--49--10411Chr02:8979145..8979164 (20 bp)
TTATTTGGCCCCTCAGAGGTGAGCC
LOC_Os02g15870
Os.24599.1.A1_at--389--8471NONE
TGGCCCCTCAGAGGTGAGCCTGAGA
NONE
Os.24599.1.A1_at--471--8491Chr02:8977091..8977115 (25 bp)
TGGCTCCTCCATACGATGACTGCGA
LOC_Os02g15870
Os.24599.1.A1_at--334--9271Chr02:8977087..8977111 (25 bp)
TCCTCCATACGATGACTGCGATGAA
LOC_Os02g15870
Os.24599.1.A1_at--674--6311Chr02:8977077..8977101 (25 bp)
GATGACTGCGATGAACTATCAACAT
LOC_Os02g15870
Os.24599.1.A1_at--934--6951Chr02:8976926..8976950 (25 bp)
GTAGCAGTTACAAAACCTCATGCAG
LOC_Os02g15870
Os.24599.1.A1_at--1028--6751Chr02:8976920..8976944 (25 bp)
GTTACAAAACCTCATGCAGTTGAAA
LOC_Os02g15870
Os.24599.1.A1_at--1018--2791Chr02:8976897..8976921 (25 bp)
AAGTTAAAGCATCTGTACTTTTCGC
LOC_Os02g15870
Os.24599.1.A1_at--828--7051Chr02:8976854..8976878 (25 bp)
GTAACTGTTGTATGATGTATGCTCC
LOC_Os02g15870
Os.24599.1.A1_at--828--2251Chr02:8976825..8976849 (25 bp)
AAATCAATGCTAATGTGTAACTAAT
LOC_Os02g15870
Target Sequence 
AAAGTGTGCTTATTTGGCCCCTCAGAGGTGAGCCTGAGAGAGCCTATTCGAGCTGGTGTTGATGATGCTGGACTCAGAGA
AATAATAAGCGCTGCGGTTAAAAGGAAGAAAGCTAAACATGCTGGGATGTTTGATATTGCTAAGACGGCAAATAGACCTA
TGATTCACATTGGTGGCTGAGATCAGTTTTACCAGCTGAAAGTACCTTGGCTCCTCCATACGATGACTGCGATGAACTAT
CAACATGATAAAACAAAACAAAGATTACATGATCTTACCTTGATATGATGGTAAACTGAGGAACTCAAAACTTCAAACGG
CAATACATACAGTTTGTACAAGATATAAAAATGTTACTATACTTGTGAAATAGTAGCAGTTACAAAACCTCATGCAGTTG
AAAGTTAAAGCATCTGTACTTTTCGCTACTTGTACGAGAAAGTTGTAACTGTTGTATGATGTATGCTCCTCATAAATCAA
TGCTAATGTGTAACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24599.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis