Browse Element(s) Details


OsAffx.12062.1.S1_at

Description tigr:9630.m01486
TID=OsAffx.12062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1584011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15810OsAffx.12061.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15810Os.26082.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15820Os.49081.1.S1_at11/112+8938131..8943555expressed protein
LOC_Os02g15830NANA2+8948235..8948624hypothetical protein
LOC_Os02g15840OsAffx.12062.1.S1_at11/112+8956012..8956689hypothetical protein
LOC_Os02g15850OsAffx.2633.1.S1_at11/112+8966532..8967177hypothetical protein
LOC_Os02g15860Os.10556.1.S1_at11/112+8973639..8974476expressed protein
LOC_Os02g15870Os.24599.1.A1_at10/112+8976765..8981138Molybdenum cofactor biosynthesis protein 1 B, putative, expressed
LOC_Os02g15870Os.51870.1.S1_at1/112+8976765..8981138Molybdenum cofactor biosynthesis protein 1 B, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12062.1.S1_at--73--5011Chr02:8956166..8956652 (25 bp)
GCATGGTCACCATGACAACTGCTAG
LOC_Os02g15840
OsAffx.12062.1.S1_at--921--671Chr02:8956155..8956641 (25 bp)
ATGACAACTGCTAGTGCGGGTGCTC
LOC_Os02g15840
OsAffx.12062.1.S1_at--1038--2191Chr02:8956152..8956638 (25 bp)
ACAACTGCTAGTGCGGGTGCTCTTC
LOC_Os02g15840
OsAffx.12062.1.S1_at--57--10071Chr02:8956144..8956168 (25 bp)
TAGTGCGGGTGCTCTTCCTGCAGTT
LOC_Os02g15840
OsAffx.12062.1.S1_at--84--7711Chr02:8956138..8956162 (25 bp)
GGGTGCTCTTCCTGCAGTTGGCCAC
LOC_Os02g15840
OsAffx.12062.1.S1_at--865--9571Chr02:8956132..8956156 (25 bp)
TCTTCCTGCAGTTGGCCACTTGGCC
LOC_Os02g15840
OsAffx.12062.1.S1_at--780--1791Chr02:8956107..8956131 (25 bp)
ACCGCCCGGTCAACCTGGCATATTT
LOC_Os02g15840
OsAffx.12062.1.S1_at--931--7811Chr02:8956100..8956124 (25 bp)
GGTCAACCTGGCATATTTCTTTTCC
LOC_Os02g15840
OsAffx.12062.1.S1_at--731--3251Chr02:8956097..8956121 (25 bp)
CAACCTGGCATATTTCTTTTCCTTC
LOC_Os02g15840
OsAffx.12062.1.S1_at--1108--10231Chr02:8956071..8956095 (25 bp)
TTTGGCTTTGCTCGCCTAGCAGAAA
LOC_Os02g15840
OsAffx.12062.1.S1_at--73--8311Chr02:8956068..8956092 (25 bp)
GGCTTTGCTCGCCTAGCAGAAAAAA
LOC_Os02g15840
Target Sequence 
GCATGGTCACCATGACAACTGCTAGTGCGGGTGCTCTTCCTGCAGTTGGCCACTTGGCCACCGCCCGGTCAACCTGGCAT
ATTTCTTTTCCTTCCTTTGGCTTTGCTCGCCTAGCAGAAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis