Browse Element(s) Details


Os.49081.1.S1_at

Description gb:AK104067.1
DB_XREF= gi:32989276
TID=Os.49081.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49081 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-D09, full insert sequence.
FL= gb:AK104067.1 gb:AK073995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1582011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15780OsAffx.24272.1.S1_at11/112+8914363..8914846hypothetical protein
LOC_Os02g15790OsAffx.2631.1.S1_at11/112+8917942..8923329hypothetical protein
LOC_Os02g15790Os.27021.1.S1_x_at1/112+8917942..8923329hypothetical protein
LOC_Os02g15790Os.27021.1.S1_at1/112+8917942..8923329hypothetical protein
LOC_Os02g15800OsAffx.12060.1.S1_at11/112+8927860..8928276hypothetical protein
LOC_Os02g15810OsAffx.12061.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15810Os.26082.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15820Os.49081.1.S1_at11/112+8938131..8943555expressed protein
LOC_Os02g15830NANA2+8948235..8948624hypothetical protein
LOC_Os02g15840OsAffx.12062.1.S1_at11/112+8956012..8956689hypothetical protein
LOC_Os02g15850OsAffx.2633.1.S1_at11/112+8966532..8967177hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49081.1.S1_at--825--10131Chr02:8939308..8939332 (25 bp)
TATGCCCAAGAAATGCGCTGCTGGA
LOC_Os02g15820
Os.49081.1.S1_at--139--1251Chr02:8939209..8939233 (25 bp)
AGATTCTCCCGGTAGATCATACAGA
LOC_Os02g15820
Os.49081.1.S1_at--137--1151Chr02:8938425..8938449 (25 bp)
AGTCCCCAGAATCATCCCTTGAGAT
LOC_Os02g15820
Os.49081.1.S1_at--1035--6951Chr02:8938379..8938403 (25 bp)
GTAGAATTCAAGACCCCATTTTGGA
LOC_Os02g15820
Os.49081.1.S1_at--77--4891Chr02:8938329..8938353 (25 bp)
GCTTTGATGCTTGTTGGTTGTTGAT
LOC_Os02g15820
Os.49081.1.S1_at--649--7911Chr02:8938314..8938338 (25 bp)
GGTTGTTGATTGTCCAGCCGTCTGT
LOC_Os02g15820
Os.49081.1.S1_at--955--3871Chr02:8938293..8938317 (25 bp)
CTGTTTGCGTGGTCTCATGATCTGA
LOC_Os02g15820
Os.49081.1.S1_at--185--371Chr02:8938263..8938287 (25 bp)
ATAATCTGTGGTTGCTTTGACTGGT
LOC_Os02g15820
Os.49081.1.S1_at--904--9071Chr02:8938251..8938275 (25 bp)
TGCTTTGACTGGTGCTTGTCTGAAA
LOC_Os02g15820
Os.49081.1.S1_at--2--10411Chr02:8938191..8938215 (25 bp)
TTTTGTGCTATGAAACCGGGCCATG
LOC_Os02g15820
Os.49081.1.S1_at--430--2611Chr02:8938178..8938202 (25 bp)
AACCGGGCCATGCTGGAAGTATATA
LOC_Os02g15820
Target Sequence 
TATGCCCAAGAAATGCGCTGCTGGAAATACAGGTGTATTTGTTAATGGGAGAGAACTTCACCAGAAGGATTTGGATTTAC
TTGTGGNTCGAGGACTCCCAGATTCTCCCGGTAGATCATACAGAGTTGAGATGTCCGGTAAAGTGTCGGATGAAGTCTCT
GGTGAGGAGNTGTATTGTCTCGGCAAACTTGCACCNACCGTCGAGAAAATGAAGCGCGGATTTGGCATGAGAGTCCCCAG
AATCATCCCTTGAGATCAGTGATTNTTNGGCACAACTGTAGAATTCAAGACCCCATTTTGGATGCTGTTTCGGTTCTTCT
GNGAAATGCTTTGATGCTTGTTGGTTGTTGATTGTCCAGCCGTCTGTTTGCGTGGTCTCATGATCTGAGATGTATAATCT
GTGGTTGCTTTGACTGGTGCTTGTCTGAAAAATTATCCAATGGAAATTTTGCAATGTGAAGTTTGTTTTGTGCTATGAAA
CCGGGCCATGCTGGAAGTATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis