Browse Element(s) Details


OsAffx.24272.1.S1_at

Description tigr:9630.m01480
TID=OsAffx.24272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1578011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15770NANA2+8894493..8895107hypothetical protein
LOC_Os02g15780OsAffx.24272.1.S1_at11/112+8914363..8914846hypothetical protein
LOC_Os02g15790OsAffx.2631.1.S1_at11/112+8917942..8923329hypothetical protein
LOC_Os02g15790Os.27021.1.S1_x_at1/112+8917942..8923329hypothetical protein
LOC_Os02g15790Os.27021.1.S1_at1/112+8917942..8923329hypothetical protein
LOC_Os02g15800OsAffx.12060.1.S1_at11/112+8927860..8928276hypothetical protein
LOC_Os02g15810OsAffx.12061.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15810Os.26082.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15820Os.49081.1.S1_at11/112+8938131..8943555expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24272.1.S1_at--312--9191Chr02:8914788..8914812 (25 bp)
TGCCATTCTGCTTACCCTGGTTCAG
LOC_Os02g15780
OsAffx.24272.1.S1_at--56--1031Chr02:8914660..8914778 (25 bp)
AGGTCGCTTAAGCACGGCAGCTATG
LOC_Os02g15780
OsAffx.24272.1.S1_at--667--5691Chr02:8914625..8914649 (25 bp)
GACTTACAGGATCTGAACCATCATT
LOC_Os02g15780
OsAffx.24272.1.S1_at--119--6031Chr02:8914594..8914618 (25 bp)
GAGAGGTTTTTTCCGCTACAGGAGA
LOC_Os02g15780
OsAffx.24272.1.S1_at--447--6051Chr02:8914573..8914597 (25 bp)
GAGATTACCAGTAGAGGCCCAGTCT
LOC_Os02g15780
OsAffx.24272.1.S1_at--1099--1151Chr02:8914553..8914577 (25 bp)
AGTCTCTATCCACAGCAGCAGATGA
LOC_Os02g15780
OsAffx.24272.1.S1_at--951--6311Chr02:8914533..8914557 (25 bp)
GATGACAAGTCTCTACGACTCCATG
LOC_Os02g15780
OsAffx.24272.1.S1_at--211--7531Chr02:8914508..8914532 (25 bp)
GTGGACAGCTCCGTAATTATTCGAG
LOC_Os02g15780
OsAffx.24272.1.S1_at--820--5951Chr02:8914474..8914498 (25 bp)
GAGCAATGAGTCTTTGGTTCCTAAT
LOC_Os02g15780
OsAffx.24272.1.S1_at--358--3071Chr02:8914452..8914476 (25 bp)
AATCATAATATTGGTCTCTTGGGAA
LOC_Os02g15780
OsAffx.24272.1.S1_at--1093--2731Chr02:8914396..8914420 (25 bp)
AAGAAGGTGCCGTACTGCTGCATTC
LOC_Os02g15780
Target Sequence 
TGCCATTCTGCTTACCCTGGTTCAGCTGCTTGTCAGGTCGCTTAAGCACGGCAGCTATGAGAAAAATAAGACTTACAGGA
TCTGAACCATCATTAAAGAGGAGAGGTTTTTTCCGCTACAGGAGATTACCAGTAGAGGCCCAGTCTCTATCCACAGCAGC
AGATGACAAGTCTCTACGACTCCATGGTGGACAGCTCCGTAATTATTCGAGTACTTCGATGAGCAATGAGTCTTTGGTTC
CTAATCATAATATTGGTCTCTTGGGAAGAATTCAGCAACTAATAGATTCCCATCAATCAAGAAGGTGCCGTACTGCTGCA
TTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis