Browse Element(s) Details


OsAffx.12060.1.S1_at

Description tigr:9630.m01482
TID=OsAffx.12060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1580011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15780OsAffx.24272.1.S1_at11/112+8914363..8914846hypothetical protein
LOC_Os02g15790OsAffx.2631.1.S1_at11/112+8917942..8923329hypothetical protein
LOC_Os02g15790Os.27021.1.S1_x_at1/112+8917942..8923329hypothetical protein
LOC_Os02g15790Os.27021.1.S1_at1/112+8917942..8923329hypothetical protein
LOC_Os02g15800OsAffx.12060.1.S1_at11/112+8927860..8928276hypothetical protein
LOC_Os02g15810OsAffx.12061.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15810Os.26082.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15820Os.49081.1.S1_at11/112+8938131..8943555expressed protein
LOC_Os02g15830NANA2+8948235..8948624hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12060.1.S1_at--693--4231Chr02:8927947..8927971 (25 bp)
CCGAGGCTGCTGCACAAGTTCTTCT
LOC_Os02g15800
OsAffx.12060.1.S1_at--665--911Chr02:8927950..8927974 (25 bp)
AGGCTGCTGCACAAGTTCTTCTTCA
LOC_Os02g15800
OsAffx.12060.1.S1_at--734--4771Chr02:8927952..8927976 (25 bp)
GCTGCTGCACAAGTTCTTCTTCAAG
LOC_Os02g15800
OsAffx.12060.1.S1_at--562--9111Chr02:8927954..8927978 (25 bp)
TGCTGCACAAGTTCTTCTTCAAGGT
LOC_Os02g15800
OsAffx.12060.1.S1_at--207--10571Chr02:8927965..8927989 (25 bp)
TTCTTCTTCAAGGTGCTGCGGCTGA
LOC_Os02g15800
OsAffx.12060.1.S1_at--825--3651Chr02:8927967..8927991 (25 bp)
CTTCTTCAAGGTGCTGCGGCTGAGG
LOC_Os02g15800
OsAffx.12060.1.S1_at--131--4611Chr02:8928025..8928049 (25 bp)
GCGTTCGAGGCCTACTACGGCTACC
LOC_Os02g15800
OsAffx.12060.1.S1_at--761--4011Chr02:8928026..8928050 (25 bp)
CGTTCGAGGCCTACTACGGCTACCG
LOC_Os02g15800
OsAffx.12060.1.S1_at--692--4231Chr02:8928048..8928072 (25 bp)
CCGGATGGTGGACGAGTACTACTAC
LOC_Os02g15800
OsAffx.12060.1.S1_at--416--8411Chr02:8928095..8928119 (25 bp)
GGCCGGCGTCTTGGGCGGGCGTGCT
LOC_Os02g15800
OsAffx.12060.1.S1_at--386--9492Chr04:8226757..8227101 (25 bp)
TCTCCTCCATCCCGGAGGAGGAGAG
NONE
Target Sequence 
CCGAGGCTGCTGCACAAGTTCTTCTTCAAGGTGCTGCGGCTGAGGCCGGCGGCGGCGGCGGCGGAGCCCGGCGCCGCCGC
GTTCGAGGCCTACTACGGCTACCGGATGGTGGACGAGTACTACTACTACAGCTACGGCGGCGCCGCCGGGCCGGCGTCTT
GGGCGGGCGTGCTCTCCTCCATCCCGGAGGAGGAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12060.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis