Browse Element(s) Details


OsAffx.12061.1.S1_s_at

Description tigr:9630.m01483
TID=OsAffx.12061.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to embryogenic callus protein 98b - carrot
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1581011/11HMG box family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15780OsAffx.24272.1.S1_at11/112+8914363..8914846hypothetical protein
LOC_Os02g15790OsAffx.2631.1.S1_at11/112+8917942..8923329hypothetical protein
LOC_Os02g15790Os.27021.1.S1_x_at1/112+8917942..8923329hypothetical protein
LOC_Os02g15790Os.27021.1.S1_at1/112+8917942..8923329hypothetical protein
LOC_Os02g15800OsAffx.12060.1.S1_at11/112+8927860..8928276hypothetical protein
LOC_Os02g15810OsAffx.12061.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15810Os.26082.1.S1_s_at11/112+8935098..8937137HMG box family protein, expressed
LOC_Os02g15820Os.49081.1.S1_at11/112+8938131..8943555expressed protein
LOC_Os02g15830NANA2+8948235..8948624hypothetical protein
LOC_Os02g15840OsAffx.12062.1.S1_at11/112+8956012..8956689hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0000785cellular_componentchromatin
GO:0003677molecular_functionDNA binding
GO:0003682molecular_functionchromatin binding
GO:0003700molecular_functiontranscription factor activity
GO:0030527molecular_functionstructural constituent of chromatin
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12061.1.S1_s_at--769--1411Chr02:8935980..8936004 (25 bp)
AGAACGTCCCCGAGATCGGCAGGAT
LOC_Os02g15810
OsAffx.12061.1.S1_s_at--626--4231Chr02:8935971..8935995 (25 bp)
CCGAGATCGGCAGGATCACCGGCGA
LOC_Os02g15810
OsAffx.12061.1.S1_s_at--902--9671Chr02:8935956..8935980 (25 bp)
TCACCGGCGAGGAGTGGAAGGCGAT
LOC_Os02g15810
OsAffx.12061.1.S1_s_at--663--8511Chr02:8935942..8935966 (25 bp)
TGGAAGGCGATGTCCGAGGCGGAGA
LOC_Os02g15810
OsAffx.12061.1.S1_s_at--630--1451Chr02:8935920..8935944 (25 bp)
AGAAGGCGCCGTTCGAGGCGGCGGC
LOC_Os02g15810
OsAffx.12061.1.S1_s_at--147--9971Chr02:8935876..8935900 (25 bp)
TACCAGGTGGAGATGGCGGCGTACC
LOC_Os02g15810
OsAffx.12061.1.S1_s_at--1111--1311Chr02:8935866..8935890 (25 bp)
AGATGGCGGCGTACCGGCAGAGGAA
LOC_Os02g15810
OsAffx.12061.1.S1_s_at--1079--8011Chr02:8935838..8935862 (25 bp)
GGAGGAGGCGGCGTGCCAGGAGAAA
LOC_Os02g15810
OsAffx.12061.1.S1_s_at--852--1271Chr02:8935794..8935818 (25 bp)
AGATCATGAAGCAGGAGGCGCTCCA
LOC_Os02g15810
OsAffx.12061.1.S1_s_at--1065--9611Chr02:8935791..8935815 (25 bp)
TCATGAAGCAGGAGGCGCTCCAGCT
LOC_Os02g15810
OsAffx.12061.1.S1_s_at--953--8391Chr02:8935778..8935802 (25 bp)
GGCGCTCCAGCTGCTCAAGAAGAAG
LOC_Os02g15810
Target Sequence 
AGAACGTCCCCGAGATCGGCAGGATCACCGGCGAGGAGTGGAAGGCGATGTCCGAGGCGGAGAAGGCGCCGTTCGAGGCG
GCGGCGCGGAAGCAGAGGGAGGAGTACCAGGTGGAGATGGCGGCGTACCGGCAGAGGAAGCAGGAGGAGGCGGCGTGCCA
GGAGAAAGAGGAGGAGGAGCAGAAGAAGATCATGAAGCAGGAGGCGCTCCAGCTGCTCAAGAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12061.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis