Browse Element(s) Details


Os.14762.1.S1_x_at

Description gb:AK120985.1
DB_XREF= gi:37990608
TID=Os.14762.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033093K10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042E02, full insert sequence.
FL= gb:AK120985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g479301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47879NANA11+28322950..28323295NA
LOC_Os11g47890OsAffx.7080.1.S1_x_at2/1111+28329630..28331546GRAS family transcription factor containing protein, expressed
LOC_Os11g47900Os.51719.1.S1_at11/1111+28333372..28335505GRAS family transcription factor containing protein, expressed
LOC_Os11g47910NANA11+28337184..28338971GRAS family transcription factor containing protein
LOC_Os11g47920NANA11+28341012..28342793GRAS family transcription factor containing protein
LOC_Os11g47930Os.14762.2.S1_x_at6/1111+28343996..28346570expressed protein
LOC_Os11g47930Os.14762.1.S1_x_at1/1111+28343996..28346570expressed protein
LOC_Os11g47930Os.14762.3.S1_x_at1/1111+28343996..28346570expressed protein
LOC_Os11g47930OsAffx.24274.1.S1_at1/1111+28343996..28346570expressed protein
LOC_Os11g47930Os.18172.1.S1_s_at1/1111+28343996..28346570expressed protein
LOC_Os11g47940NANA11+28355908..28359106hypothetical protein
LOC_Os11g47944NANA11+28360913..28361757Thaumatin family protein
LOC_Os11g47950OsAffx.7446.1.S1_at10/1111+28363415..28365589Cyclin, N-terminal domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14762.1.S1_x_at--844--4991Chr11:28340313..28340337 (25 bp)
GCATGACGACGTGGACGGTCTCGCA
NONE
Os.14762.1.S1_x_at--1046--8051Chr11:28340271..28340295 (25 bp)
GGAGCAAGACCGCTTTGTGTCACGC
NONE
Os.14762.1.S1_x_at--353--8012Chr11:28340246..28340270 (25 bp)
GGATGGCCAAACAGCGAGACCGACA
NONE
Os.14762.1.S1_x_at--1048--272Chr11:28340197..28340221 (25 bp)
ATAGTATCGACTCATGCCATGTTGA
NONE
Os.14762.1.S1_x_at--1160--9911Chr11:28339570..28339594 (25 bp)
TACTGTTCTCAGTCAATTCTTCAAG
NONE
Os.14762.1.S1_x_at--722--832Chr11:28343205..28343229 (25 bp)
ATGGAGGCATCAATTCCTTCAACCC
NONE
Os.14762.1.S1_x_at--33--4332Chr11:28343182..28343206 (25 bp)
CCATTCATACCCAACAATTTTCCTG
NONE
Os.14762.1.S1_x_at--510--2132Chr11:28343119..28343143 (25 bp)
ACAGGGTTTGATGTTTTCCATGCTT
NONE
Os.14762.1.S1_x_at--231--6811Chr11:28339278..28339302 (25 bp)
GTTTTCCATGCTTGGCTTGGATTCA
NONE
Os.14762.1.S1_x_at--282--10591Chr11:28339244..28339268 (25 bp)
TTCTCCTCCTTGTTGGCATATTATA
NONE
Os.14762.1.S1_x_at--1068--2471Chr11:28339192..28339216 (25 bp)
AACAGGTCATGTTGCAACTGGAGCA
NONE
Target Sequence 
GCATGACGACGTGGACGGTCTCGCACGGTGTCATGAGGTGATGGAGCAAGACCGCTTTGTGTCACGCGGATGGCCAAACA
GCGAGACCGACATTCAAATTGATTAATTTGTTTACAATAGTATCGACTCATGCCATGTTGAGAAGGTGATCAGATGTTCA
GAATTTCTACCAGGAGGATTGTTGTGATAACTGATGTCAAATCATTGTAAAAAGGGCAGGTGCAAGGAAACTTAACAACT
TCACCCTGAACTATGTTACTGTTCTCAGTCAATTCTTCAAGTTGAAAGGACTCAACACATAATGTCTGTAGACTGCAGTC
TGTAGAGGCAAAATCCAGGCCGAAGAGGACGGAAAAGGATGGAGGCATCAATTCCTTCAACCCATTCATACCCAACAATT
TTCCTGGTGATTGATAGCATGGTGGTGTTTTAGTTTTGCTGAGAACAGGGTTTGATGTTTTCCATGCTTGGCTTGGATTC
ATTACCCACCTTCTCCTCCTTGTTGGCATATTATACGGCTGATGGCTGTTACAAGGAAAATAAACAGGTCATGTTGCAAC
TGGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14762.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis