Browse Element(s) Details


OsAffx.19432.1.S1_at

Description tigr:9639.m04477
TID=OsAffx.19432.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4786011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47820Os.8051.1.S1_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47820Os.8051.2.S1_x_at11/1111+28280830..28284801Glucan endo-1,3-beta-glucosidase precursor, putative, expressed
LOC_Os11g47830Os.14083.1.S1_at11/1111+28287909..28294907RNA recognition motif family protein, expressed
LOC_Os11g47840Os.30200.1.S1_at11/1111+28295527..28299353rhomboid family protein, putative, expressed
LOC_Os11g47850NANA11+28302815..28303450transposon protein, putative, unclassified
LOC_Os11g47860OsAffx.19432.1.S1_at11/1111+28306549..28307016hypothetical protein
LOC_Os11g47870Os.27419.1.S1_at11/1111+28312112..28314560GRAS family transcription factor containing protein, expressed
LOC_Os11g47870OsAffx.7080.1.S1_x_at2/1111+28312112..28314560GRAS family transcription factor containing protein, expressed
LOC_Os11g47879NANA11+28322950..28323295NA
LOC_Os11g47890OsAffx.7080.1.S1_x_at2/1111+28329630..28331546GRAS family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19432.1.S1_at--862--1591Chr11:28306950..28306974 (25 bp)
AGCTCCCGTGCGAGCTGCGCGTTCT
LOC_Os11g47860
OsAffx.19432.1.S1_at--468--8472Chr11:4756896..4756919 (24 bp)
TGGCGCCTGCGGCAGCATGAGCGGG
NONE
OsAffx.19432.1.S1_at--904--4713Chr11:4756934..4756958 (25 bp)
GCTGGAGGATATGACCTGCTCCTCG
NONE
OsAffx.19432.1.S1_at--76--1013Chr11:4756939..4756963 (25 bp)
AGGATATGACCTGCTCCTCGCCGGA
NONE
OsAffx.19432.1.S1_at--474--10511Chr11:28306706..28306730 (25 bp)
TTCACCTTCCATCCGACAACGTCGG
LOC_Os11g47860
OsAffx.19432.1.S1_at--1072--9091Chr11:28306640..28306664 (25 bp)
TGCTCGATCCGCTCATCCGGGTAAC
LOC_Os11g47860
OsAffx.19432.1.S1_at--1062--9491Chr11:28306628..28306652 (25 bp)
TCATCCGGGTAACCGGCCTTGTCGC
LOC_Os11g47860
OsAffx.19432.1.S1_at--939--10811Chr11:28306610..28306634 (25 bp)
TTGTCGCCCCTGGATCTGTTCCGCG
LOC_Os11g47860
OsAffx.19432.1.S1_at--401--3871Chr11:28306595..28306619 (25 bp)
CTGTTCCGCGGTGGATTGGGTGCCA
LOC_Os11g47860
OsAffx.19432.1.S1_at--142--7931Chr11:28306583..28306607 (25 bp)
GGATTGGGTGCCAGCTAGCTTGCCC
LOC_Os11g47860
OsAffx.19432.1.S1_at--541--8631Chr11:28306579..28306603 (25 bp)
TGGGTGCCAGCTAGCTTGCCCGAGC
LOC_Os11g47860
Target Sequence 
AGCTCCCGTGCGAGCTGCGCGTTCTCCCGCATGCCACCGGACGCGACGCCGCCGGAGCCGGAGCCGGATGGCGCCTGCGG
CAGCATGAGCGGGGGCTCAGGGGACGAGCTGGAGGATATGACCTGCTCCTCGCCGGACAGCACCGGGGAGCCATCCCGCG
TCATCATCGGCAGCGCCATCGGGATCGCGGCCGCGACCGTGACCGCCCCCGTCGTCGTCGTCGCTGGCACCGGCGGCGTG
CCTCTTCACCTTCCATCCGACAACGTCGGCCTCGGCCCCATCACACTCCGCCGCCGCCGCCGCCGCCTCCTGCTCGATCC
GCTCATCCGGGTAACCGGCCTTGTCGCCCCTGGATCTGTTCCGCGGTGGATTGGGTGCCAGCTAGCTTGCCCGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19432.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis