Browse Element(s) Details


OsAffx.19430.1.S1_at

Description tigr:9639.m04460
TID=OsAffx.19430.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AL117188 RING-H2 finger protein RHA3b
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4770011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47620OsAffx.7443.1.S1_at11/1111+28204625..28205116Zinc finger, C2H2 type family protein
LOC_Os11g47630Os.51307.1.S1_at11/1111+28208091..28208934Zinc finger, C2H2 type family protein, expressed
LOC_Os11g47640OsAffx.19426.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640Os.52655.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640OsAffx.14237.1.S1_at1/1111+28211601..28215464expressed protein
LOC_Os11g47650Os.9833.1.S1_at11/1111+28216432..28219984expressed protein
LOC_Os11g47650Os.54085.1.S1_at3/1111+28216432..28219984expressed protein
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein
LOC_Os11g47670Os.55400.2.S1_at11/1111+28223321..28224191Thaumatin family protein, expressed
LOC_Os11g47680OsAffx.19428.1.S1_s_at11/1111+28225195..28225949Thaumatin family protein, expressed
LOC_Os11g47690OsAffx.19429.1.S1_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47690OsAffx.19429.1.S1_x_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47700OsAffx.19430.1.S1_at11/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47700OsAffx.19429.1.S1_x_at1/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed
LOC_Os11g47730Os.8604.1.S1_a_at11/1111+28235028..28236831expressed protein
LOC_Os11g47740OsAffx.31527.1.S1_at11/1111+28242676..28243729hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_x_at11/1111+28244398..28245655hypothetical protein
LOC_Os11g47750OsAffx.31528.1.S1_at9/1111+28244398..28245655hypothetical protein
LOC_Os11g47760Os.57477.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47760Os.14.1.S1_x_at11/1111+28246237..28250545Heat shock cognate 70 kDa protein, putative, expressed
LOC_Os11g47770OsAffx.31529.1.S1_at9/1111+28251466..28253263selT/selW/selH selenoprotein domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19430.1.S1_at--588--9851Chr11:28227302..28227326 (25 bp)
TACAACAACAGGAACGCCGGCGATC
LOC_Os11g47700
OsAffx.19430.1.S1_at--834--8151Chr11:28227312..28227336 (25 bp)
GGAACGCCGGCGATCAGTCGGACTA
LOC_Os11g47700
OsAffx.19430.1.S1_at--328--9451Chr11:28227325..28227349 (25 bp)
TCAGTCGGACTACAAGGCGACGATC
LOC_Os11g47700
OsAffx.19430.1.S1_at--162--571Chr11:28227353..28227377 (25 bp)
ATCCTGTTCAGCGTCTTCTTTGTCG
LOC_Os11g47700
OsAffx.19430.1.S1_at--924--9631Chr11:28227387..28227411 (25 bp)
TCAGGCTCATCCACTTCATCATCAA
LOC_Os11g47700
OsAffx.19430.1.S1_at--358--411Chr11:28227404..28227428 (25 bp)
ATCATCAACCAGTCAAACAACCGCG
LOC_Os11g47700
OsAffx.19430.1.S1_at--608--4831Chr11:28227452..28227476 (25 bp)
GCTACTAGCGACAGGCGGCTGGGAG
LOC_Os11g47700
OsAffx.19430.1.S1_at--673--8351Chr11:28227485..28227509 (25 bp)
GGCGTTTCACGTGTGCCGGCCAGAC
LOC_Os11g47700
OsAffx.19430.1.S1_at--641--2571Chr11:28227545..28227569 (25 bp)
AACGGCACCGCTATGGCGTGGCAGC
LOC_Os11g47700
OsAffx.19430.1.S1_at--251--3711Chr11:28227555..28227579 (25 bp)
CTATGGCGTGGCAGCCACCGCCGTG
LOC_Os11g47700
OsAffx.19430.1.S1_at--899--7331Chr11:28227577..28227601 (25 bp)
GTGCACCAGCACGTACCGGAGGGAC
LOC_Os11g47700
Target Sequence 
TACAACAACAGGAACGCCGGCGATCAGTCGGACTACAAGGCGACGATCGCCATCCTGTTCAGCGTCTTCTTTGTCGTCAT
CCTCATCAGGCTCATCCACTTCATCATCAACCAGTCAAACAACCGCGCTCCGGCGAACGGTGGCGCCGCCGCTACTAGCG
ACAGGCGGCTGGGAGGCGGCGGCGGCGTTTCACGTGTGCCGGCCAGACTTCCCCGTCAGCGTCCGGGCGGCGCCGGCGCC
GGCAACGGCACCGCTATGGCGTGGCAGCCACCGCCGTGCACCAGCACGTACCGGAGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis