Browse Element(s) Details


OsAffx.7443.1.S1_at

Description tigr:9639.m04452
TID=OsAffx.7443.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to ZPT2-14
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4762011/11Zinc finger, C2H2 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47560Os.50837.1.S1_at11/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.49578.1.S1_x_at1/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.49578.1.S1_x_at11/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.50837.1.S1_at2/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47580Os.9347.1.S1_at11/1111+28195854..28197103Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47590Os.51920.1.S1_at11/1111+28197991..28199150Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47600Os.32890.1.S1_at11/1111+28200834..28202000Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47620OsAffx.7443.1.S1_at11/1111+28204625..28205116Zinc finger, C2H2 type family protein
LOC_Os11g47630Os.51307.1.S1_at11/1111+28208091..28208934Zinc finger, C2H2 type family protein, expressed
LOC_Os11g47640OsAffx.19426.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640Os.52655.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640OsAffx.14237.1.S1_at1/1111+28211601..28215464expressed protein
LOC_Os11g47650Os.9833.1.S1_at11/1111+28216432..28219984expressed protein
LOC_Os11g47650Os.54085.1.S1_at3/1111+28216432..28219984expressed protein
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein
LOC_Os11g47670Os.55400.2.S1_at11/1111+28223321..28224191Thaumatin family protein, expressed
LOC_Os11g47680OsAffx.19428.1.S1_s_at11/1111+28225195..28225949Thaumatin family protein, expressed
LOC_Os11g47690OsAffx.19429.1.S1_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47690OsAffx.19429.1.S1_x_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47700OsAffx.19430.1.S1_at11/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47700OsAffx.19429.1.S1_x_at1/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0009611biological_processresponse to wounding
GO:0009631biological_processcold acclimation
GO:0009643biological_processphotosynthetic acclimation
GO:0010200biological_processresponse to chitin
GO:0042538biological_processhyperosmotic salinity response
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7443.1.S1_at--686--1391Chr11:28205036..28205060 (25 bp)
AGACGATAACCAACTTAGCCAGCTC
LOC_Os11g47620
OsAffx.7443.1.S1_at--260--331Chr11:28205031..28205055 (25 bp)
ATAACCAACTTAGCCAGCTCGCGGA
LOC_Os11g47620
OsAffx.7443.1.S1_at--247--9351Chr11:28205013..28205037 (25 bp)
TCGCGGAGCTCGACGTGCAGCTCTC
LOC_Os11g47620
OsAffx.7443.1.S1_at--48--2671Chr11:28204774..28204798 (25 bp)
AAGCCTCTAATCCACGCGTGCGAGG
LOC_Os11g47620
OsAffx.7443.1.S1_at--1139--3731Chr11:28204768..28204792 (25 bp)
CTAATCCACGCGTGCGAGGTGTGTG
LOC_Os11g47620
OsAffx.7443.1.S1_at--200--3491Chr11:28204723..28204747 (25 bp)
CAGGCCCTAGGTGGCCACATGAGGA
LOC_Os11g47620
OsAffx.7443.1.S1_at--778--4391Chr11:28204710..28204734 (25 bp)
GCCACATGAGGAGGCATCGGCCTAG
LOC_Os11g47620
OsAffx.7443.1.S1_at--272--6211Chr11:28204700..28204724 (25 bp)
GAGGCATCGGCCTAGAAATATTGAT
LOC_Os11g47620
OsAffx.7443.1.S1_at--778--1411Chr11:28204687..28204711 (25 bp)
AGAAATATTGATCTGGGCCATAAGC
LOC_Os11g47620
OsAffx.7443.1.S1_at--477--9471Chr11:28204676..28204700 (25 bp)
TCTGGGCCATAAGCAGATCGTCATG
LOC_Os11g47620
OsAffx.7443.1.S1_at--1103--7111Chr11:28204657..28204681 (25 bp)
GTCATGCCAGAAATTCGGCCCAGTT
LOC_Os11g47620
Target Sequence 
AGACGATAACCAACTTAGCCAGCTCGCGGAGCTCGACGTGCAGCTCTCGCTGTCGCTGGCGTGCGGCTCGACGACGGCGA
TGTCATCGTCCGGCGATGAGGAGGACGCGGAGCCACGGCGTCGCCGGCGGGACGAGGAGGCGGCGGCGGCGGCGTTCGAG
TGCCGGACGTGCGGGCGGCGGTTCCCGTCGCACCAGGCGCTCGGCGGCCACCGGACCAGTCACCTCCGGCCCACTACCAA
CAAGCGGCGGCCCGGCCCGTCCAAGCCTCTAATCCACGCGTGCGAGGTGTGTGGGTTGGGCTTTCAGATGGGCCAGGCCC
TAGGTGGCCACATGAGGAGGCATCGGCCTAGAAATATTGATCTGGGCCATAAGCAGATCGTCATGCCAGAAATTCGGCCC
AGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis