Browse Element(s) Details


Os.50837.1.S1_at

Description gb:AK058882.1
DB_XREF= gi:32968900
TID=Os.50837.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50837 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-007-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-B10, full insert sequence.
FL= gb:AK058882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4756011/11Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g475702/11Xylanase inhibitor protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47480OsAffx.19424.1.S1_at10/1111+28155307..28157423hypothetical protein
LOC_Os11g47490OsAffx.19425.1.S1_at11/1111+28160381..28161239Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os11g47494NANA11+28162148..28162654hypothetical protein
LOC_Os11g47500Os.172.1.S1_a_at11/1111+28164543..28166059Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47510Os.4670.1.S1_at11/1111+28169475..28170818Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47520Os.25636.1.S1_at11/1111+28172142..28173317Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47530Os.169.1.S1_at11/1111+28175114..28176274Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47550Os.9964.1.S1_at11/1111+28177983..28179140Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.50837.1.S1_at11/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.49578.1.S1_x_at1/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.49578.1.S1_x_at11/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.50837.1.S1_at2/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47580Os.9347.1.S1_at11/1111+28195854..28197103Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47590Os.51920.1.S1_at11/1111+28197991..28199150Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47600Os.32890.1.S1_at11/1111+28200834..28202000Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47620OsAffx.7443.1.S1_at11/1111+28204625..28205116Zinc finger, C2H2 type family protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50837.1.S1_at--52--2031Chr11:28182130..28182154 (25 bp)
ACTACGAGCAGCTTGCCCGGCAGCT
LOC_Os11g47560
Os.50837.1.S1_at--516--572Chr11:28182249..28182273 (25 bp)
ATCCATGTCCGGATCTTCGGCGACG
LOC_Os11g47560
Os.50837.1.S1_at--124--731Chr11:28182285..28182309 (25 bp)
ATGTTCCCCAAGGACGCGTGGGAGA
LOC_Os11g47560
Os.50837.1.S1_at--902--9951Chr11:28182324..28182348 (25 bp)
TACCCGCGGTGCACGGTGTTCCTGA
LOC_Os11g47560
Os.50837.1.S1_at--707--7691Chr11:28182378..28182402 (25 bp)
GGGTACATGTTCCAGAAGGATCTCT
LOC_Os11g47560
Os.50837.1.S1_at--1141--1931Chr11:28182406..28182430 (25 bp)
ACGGCGTGCAGCAGTTCATCGACAA
LOC_Os11g47560
Os.50837.1.S1_at--203--3531Chr11:28182422..28182446 (25 bp)
CATCGACAAGGAGCCCAACTACGGA
LOC_Os11g47560
Os.50837.1.S1_at--468--2012Chr11:28182439..28182463 (25 bp)
ACTACGGAGGGATCGCCATCTGGGA
LOC_Os11g47560
Os.50837.1.S1_at--671--3731Chr11:28182488..28182512 (25 bp)
CTACAGTGGTGAGGGCTAATGCATC
LOC_Os11g47560
Os.50837.1.S1_at--553--631Chr11:28182506..28182530 (25 bp)
ATGCATCATGATCAATCTCTACCTG
LOC_Os11g47560
Os.50837.1.S1_at--1087--3051Chr11:28182519..28182543 (25 bp)
AATCTCTACCTGCTATATATCTCTC
LOC_Os11g47560
Target Sequence 
ACTACGAGCAGCTTGCCCGGCAGCTGCACGGCCGCGGCGTGCTGCTGACGGCGACGGTGAGGTGCGCGTACCCGGACAGC
CGGATGGAGGCGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCATGTCCGGATCTTCGGCGACGACCAGTGCACCATGTT
CCCCAAGGACGCGTGGGAGAAGTGGGCGGCGGCGTACCCGCGGTGCACGGTGTTCCTGACGGTGGTGGCGTCGCCGGAGC
AGGACGAGGGGTACATGTTCCAGAAGGATCTCTACTACGGCGTGCAGCAGTTCATCGACAAGGAGCCCAACTACGGAGGG
ATCGCCATCTGGGACAGGTACTACGACAAGAAAGCCAACTACAGTGGTGAGGGCTAATGCATCATGATCAATCTCTACCT
GCTATATATCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis