Browse Element(s) Details


OsAffx.19425.1.S1_at

Description tigr:9639.m04439
TID=OsAffx.19425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Pto-like kinase OG11
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4749011/11Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47450OsAffx.19423.1.S1_s_at11/1111+28141521..28144519hypothetical protein
LOC_Os11g47450OsAffx.19423.1.S1_at10/1111+28141521..28144519hypothetical protein
LOC_Os11g47450Os.29823.2.S1_x_at1/1111+28141521..28144519hypothetical protein
LOC_Os11g47450Os.32680.1.S1_at1/1111+28141521..28144519hypothetical protein
LOC_Os11g47460Os.10174.1.S1_at11/1111+28145896..28147303myb family transcription factor, putative, expressed
LOC_Os11g47470Os.27639.1.S1_x_at2/1111+28150033..28153819retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g47480OsAffx.19424.1.S1_at10/1111+28155307..28157423hypothetical protein
LOC_Os11g47490OsAffx.19425.1.S1_at11/1111+28160381..28161239Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os11g47494NANA11+28162148..28162654hypothetical protein
LOC_Os11g47500Os.172.1.S1_a_at11/1111+28164543..28166059Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47510Os.4670.1.S1_at11/1111+28169475..28170818Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47520Os.25636.1.S1_at11/1111+28172142..28173317Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47530Os.169.1.S1_at11/1111+28175114..28176274Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47550Os.9964.1.S1_at11/1111+28177983..28179140Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.50837.1.S1_at11/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.49578.1.S1_x_at1/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19425.1.S1_at--168--2011Chr11:28160446..28160470 (25 bp)
ACTCAAGTTCATCACAGATGGCTTC
LOC_Os11g47490
OsAffx.19425.1.S1_at--932--6211Chr11:28160462..28160486 (25 bp)
GATGGCTTCAAAACCACAATTGGGA
LOC_Os11g47490
OsAffx.19425.1.S1_at--826--7651Chr11:28160492..28160516 (25 bp)
GGGTTTGGGCCTGTATACATTGGTT
LOC_Os11g47490
OsAffx.19425.1.S1_at--25--6051Chr11:28160551..28160575 (25 bp)
GAGATCACAAACATCCTCTCAAGGG
LOC_Os11g47490
OsAffx.19425.1.S1_at--678--10231Chr11:28160587..28160767 (25 bp)
TTTGGCTGAGGCTAGGGTCCACCAC
LOC_Os11g47490
OsAffx.19425.1.S1_at--604--7791Chr11:28160758..28160782 (25 bp)
GGTCCACCACAGAAACCGGGTATCA
LOC_Os11g47490
OsAffx.19425.1.S1_at--838--8171Chr11:28160843..28160867 (25 bp)
GGAAGCCTAGCGGACCACTTGAAGG
LOC_Os11g47490
OsAffx.19425.1.S1_at--274--4671Chr11:28160852..28160973 (25 bp)
GCGGACCACTTGAAGGCTATCAGTT
LOC_Os11g47490
OsAffx.19425.1.S1_at--597--3191Chr11:28160974..28160998 (25 bp)
CAATCCTCTTAAATAGTGAACAGCT
LOC_Os11g47490
OsAffx.19425.1.S1_at--1118--7351Chr11:28160989..28161013 (25 bp)
GTGAACAGCTTGCAGATTCCATCTT
LOC_Os11g47490
OsAffx.19425.1.S1_at--186--3491Chr11:28161176..28161199 (24 bp)
CAGGACTGGAGTACATGCACAGGTC
LOC_Os11g47490
Target Sequence 
ACTCAAGTTCATCACAGATGGCTTCAAAACCACAATTGGGAAGGGTGGGTTTGGGCCTGTATACATTGGTTATCTGGAGA
ATGGAACTCCCGTTGCCGTGAAGATGAGATCACAAACATCCTCTCAAGGGAATACAGAGTTTTTGGCTGAGGCTAGGGTC
CACCACAGAAACCGGGTATCATTAATAGGCTATTGCAAGGATAAGAAACATCTGGCCCTTGTGTATGAGTACATGGATGG
GGGAAGCCTAGCGGACCACTTGAAGGCTATCAGTTCAATCCTCTTAAATAGTGAACAGCTTGCAGATTCCATCTTTTTCT
TCTTCACAGGACTGGAGTACATGCACAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis