Browse Element(s) Details


Os.10174.1.S1_at

Description gb:AK111626.1
DB_XREF= gi:37988289
TID=Os.10174.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10174 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013113N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013113N19, full insert sequence.
FL= gb:AK111626.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4746011/11myb family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47440OsAffx.19422.1.S1_at11/1111+28134078..28134407hypothetical protein
LOC_Os11g47450OsAffx.19423.1.S1_s_at11/1111+28141521..28144519hypothetical protein
LOC_Os11g47450OsAffx.19423.1.S1_at10/1111+28141521..28144519hypothetical protein
LOC_Os11g47450Os.29823.2.S1_x_at1/1111+28141521..28144519hypothetical protein
LOC_Os11g47450Os.32680.1.S1_at1/1111+28141521..28144519hypothetical protein
LOC_Os11g47460Os.10174.1.S1_at11/1111+28145896..28147303myb family transcription factor, putative, expressed
LOC_Os11g47470Os.27639.1.S1_x_at2/1111+28150033..28153819retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g47480OsAffx.19424.1.S1_at10/1111+28155307..28157423hypothetical protein
LOC_Os11g47490OsAffx.19425.1.S1_at11/1111+28160381..28161239Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os11g47494NANA11+28162148..28162654hypothetical protein
LOC_Os11g47500Os.172.1.S1_a_at11/1111+28164543..28166059Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47510Os.4670.1.S1_at11/1111+28169475..28170818Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47520Os.25636.1.S1_at11/1111+28172142..28173317Xylanase inhibitor protein 2 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10174.1.S1_at--833--2071Chr11:28146451..28146475 (25 bp)
ACATTCATGATGATCGCAGCTGCAT
LOC_Os11g47460
Os.10174.1.S1_at--90--5071Chr11:28146436..28146460 (25 bp)
GCAGCTGCATGGCAAGAGTCCTCAA
LOC_Os11g47460
Os.10174.1.S1_at--969--8231Chr11:28146345..28146369 (25 bp)
GGCACCTTCCTTGCTGGGTATAGAT
LOC_Os11g47460
Os.10174.1.S1_at--468--2351Chr11:28146308..28146332 (25 bp)
AAAGCATGCAGCAATCTCCCATGTC
LOC_Os11g47460
Os.10174.1.S1_at--44--8711Chr11:28146287..28146311 (25 bp)
TGTCCACTTCTGACATCTACCATGT
LOC_Os11g47460
Os.10174.1.S1_at--831--751Chr11:28146266..28146290 (25 bp)
ATGTCAGACTACAGCTGCCCTGAGG
LOC_Os11g47460
Os.10174.1.S1_at--1131--4771Chr11:28146253..28146277 (25 bp)
GCTGCCCTGAGGTATTCTGGAAGAT
LOC_Os11g47460
Os.10174.1.S1_at--409--8491Chr11:28146205..28146229 (25 bp)
TGGCTACACAATCTGGTTATGGAAA
LOC_Os11g47460
Os.10174.1.S1_at--239--891Chr11:28146136..28146160 (25 bp)
AGGCCAGGTTTCTAAGCTACATATG
LOC_Os11g47460
Os.10174.1.S1_at--413--4851Chr11:28146121..28146145 (25 bp)
GCTACATATGTGCTTTCCAGATTTG
LOC_Os11g47460
Os.10174.1.S1_at--1070--291Chr11:28145972..28145996 (25 bp)
ATAGCTTGTGTGACTTACCTTTGAC
LOC_Os11g47460
Target Sequence 
ACATTCATGATGATCGCAGCTGCATGGCAAGAGTCCTCAAAAGCACTCAGAGTGTCATGGATGGATATACCATGGATCAG
ATATGGAAAGAAATTGAGGCGCCAGGGGCACCTTCCTTGCTGGGTATAGATGAAGGGAAAGACAAAGCATGCAGCAATCT
CCCATGTCCACTTCTGACATCTACCATGTCAGACTACAGCTGCCCTGAGGTATTCTGGAAGATTGACAATGAAGAAACAA
GGATGTTGGCTACACAATCTGGTTATGGAAAATGAGGGCCATGCTATTGAAGGATAAAGCCATACATCAAGATATAGGCC
AGGTTTCTAAGCTACATATGTGCTTTCCAGATTTGCAGTACTTATGTGGTTATATTTGTGTTACTATGGGTCTCAATATT
TACAGATCTACTATAACATTATTGGTGTGCTCATGATGTATGTATTATGTATGTATGTATGTAGAATCTAATGTGCAACA
TAGCTTGTGTGACTTACCTTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10174.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis