Browse Element(s) Details


OsAffx.19423.1.S1_at

Description tigr:9639.m04433
TID=OsAffx.19423.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4745010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47452NANA11+28115807..28117951retrotransposon protein, putative, unclassified
LOC_Os11g47440OsAffx.19422.1.S1_at11/1111+28134078..28134407hypothetical protein
LOC_Os11g47450OsAffx.19423.1.S1_s_at11/1111+28141521..28144519hypothetical protein
LOC_Os11g47450OsAffx.19423.1.S1_at10/1111+28141521..28144519hypothetical protein
LOC_Os11g47450Os.29823.2.S1_x_at1/1111+28141521..28144519hypothetical protein
LOC_Os11g47450Os.32680.1.S1_at1/1111+28141521..28144519hypothetical protein
LOC_Os11g47460Os.10174.1.S1_at11/1111+28145896..28147303myb family transcription factor, putative, expressed
LOC_Os11g47470Os.27639.1.S1_x_at2/1111+28150033..28153819retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g47480OsAffx.19424.1.S1_at10/1111+28155307..28157423hypothetical protein
LOC_Os11g47490OsAffx.19425.1.S1_at11/1111+28160381..28161239Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os11g47494NANA11+28162148..28162654hypothetical protein
LOC_Os11g47500Os.172.1.S1_a_at11/1111+28164543..28166059Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47510Os.4670.1.S1_at11/1111+28169475..28170818Xylanase inhibitor protein 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19423.1.S1_at--165--3771Chr11:28141585..28141609 (25 bp)
CTCTGATACCTGAACCAGCAATCAG
LOC_Os11g47450
OsAffx.19423.1.S1_at--890--8831Chr11:28141588..28141612 (25 bp)
TGATACCTGAACCAGCAATCAGCAT
LOC_Os11g47450
OsAffx.19423.1.S1_at--271--5431Chr11:28141596..28141620 (25 bp)
GAACCAGCAATCAGCATCAAGGGCA
LOC_Os11g47450
OsAffx.19423.1.S1_at--801--3411Chr11:28141600..28141624 (25 bp)
CAGCAATCAGCATCAAGGGCACATT
LOC_Os11g47450
OsAffx.19423.1.S1_at--676--5191Chr11:28141602..28141626 (25 bp)
GCAATCAGCATCAAGGGCACATTCA
LOC_Os11g47450
OsAffx.19423.1.S1_at--485--3071Chr11:28141604..28141628 (25 bp)
AATCAGCATCAAGGGCACATTCATC
LOC_Os11g47450
OsAffx.19423.1.S1_at--136--1531Chr11:28141608..28141632 (25 bp)
AGCATCAAGGGCACATTCATCCCCA
LOC_Os11g47450
OsAffx.19423.1.S1_at--430--371Chr11:28141611..28141635 (25 bp)
ATCAAGGGCACATTCATCCCCAAGG
LOC_Os11g47450
OsAffx.19423.1.S1_at--978--2871Chr11:28141614..28141635 (22 bp)
AAGGGCACATTCATCCCCAAGGCTT
LOC_Os11g47450
OsAffx.19423.1.S1_at--14--1091Chr11:28141615..28141635 (21 bp)
AGGGCACATTCATCCCCAAGGCTTT
LOC_Os11g47450
OsAffx.19423.1.S1_at--386--111NONE
ATTCATCCCCAAGGCTTTCCAAGTG
NONE
Target Sequence 
CTCTGATACCTGAACCAGCAATCAGCATCAAGGGCACATTCATCCCCAAGGCTTTCCAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis