Browse Element(s) Details


Os.29823.2.S1_x_at

Description gb:AK108760.1
DB_XREF= gi:32993969
TID=Os.29823.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0083M16.12 (OSJNBa0083M16.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G05, full insert sequence.
FL= gb:AK108760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0416011/11expressed protein
LOC_Os11g474501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04130Os.35230.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04130OsAffx.1926.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04140Os.45976.1.S1_x_at4/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04140Os.45976.1.S1_at2/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04160Os.29823.2.S1_x_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.3.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.1.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04170Os.37152.1.S1_at11/111+1834975..1835996expressed protein
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein
LOC_Os01g04190Os.6624.1.S1_s_at11/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_x_at9/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_at7/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.35731.2.S1_x_at5/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29823.2.S1_x_at--58--6672Chr11:28142879..28143196 (25 bp)
GTTGCATTTGCATCTAGTTCATCTG
LOC_Os11g47450
Os.29823.2.S1_x_at--480--6591Chr01:1832530..1832554 (25 bp)
GATTGCCGGTAGTTGAATCTTCACC
LOC_Os01g04160
Os.29823.2.S1_x_at--339--3071Chr01:1832545..1832569 (25 bp)
AATCTTCACCTTCTGTTGTGGGTAG
LOC_Os01g04160
Os.29823.2.S1_x_at--1120--5231Chr01:1832640..1832664 (25 bp)
GAATCAAGTGATGCTCTTTCAGGAA
LOC_Os01g04160
Os.29823.2.S1_x_at--407--1131Chr01:1832678..1832702 (25 bp)
AGTGCTTCAAGAGCTCATTTCTGCC
LOC_Os01g04160
Os.29823.2.S1_x_at--520--191Chr01:1832694..1832718 (25 bp)
ATTTCTGCCCTCACTAATGATACAA
LOC_Os01g04160
Os.29823.2.S1_x_at--973--5191Chr01:1832821..1832845 (25 bp)
GCAATTCCAATGATCAGTCGCATGA
LOC_Os01g04160
Os.29823.2.S1_x_at--954--1131Chr01:1832836..1832860 (25 bp)
AGTCGCATGACTTTCAGAACTGTTA
LOC_Os01g04160
Os.29823.2.S1_x_at--181--6171Chr01:1833240..1833264 (25 bp)
GAGGTTGAATCTTCTGCTACTTGCA
LOC_Os01g04160
Os.29823.2.S1_x_at--723--2831Chr01:1833287..1833311 (25 bp)
AAGTCCAACTTCAGTCCTCGAAGCA
LOC_Os01g04160
Os.29823.2.S1_x_at--302--4991Chr01:1833309..1833333 (25 bp)
GCATGCTTCTCGAATGATACTTCAT
LOC_Os01g04160
Target Sequence 
GTTGCATTTGCATCTAGTTCATCTGTGAACCCAGTGACAAGGAATTCATCGCAAAGCAAAGTTTCAGAGAAGAGAGGGTG
CAGAAGGACACAAGTTATTAGTACCAGTTGTAGTACAAGATTGCCGGTAGTTGAATCTTCACCTTCTGTTGTGGGTAGTT
CTGAGAAAGAGGAGTTTAGCAGGCTACTGAAAGCAAAAATTAATGAGCTTGGTTTGTCTGATAGGATTGAATCAAGTGAT
GCTCTTTCAGGAAAATTAACTGCATCAGTGCTTCAAGAGCTCATTTCTGCCCTCACTAATGATACAAACACTTCAGATTC
TCAACATAGTAACTGTTCCAATGCATACAATTCTCAGCATAGCAACTACTCTGATGCAGTAGACTGTCTAAACAACAATA
TGAGTGCATGCAATTCCAATGATCAGTCGCATGACTTTCAGAACTGTTACCAGAGGGACAGAGAGGTTGAATCTTCTGCT
ACTTGCATGAACAATGAGCCCAACCAACCAAGTCCAACTTCAGTCCTCGAAGCATGCTTCTCGAATGATACTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29823.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis