Browse Element(s) Details


Os.45939.1.S1_at

Description gb:NM_184261.1
DB_XREF= gi:34895603
GEN=OSJNBa0083M16.14
TID=Os.45939.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45939 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative hexose transporter (OSJNBa0083M16.14), mRNA.
PROD=putative hexose transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g041907/11hexose transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04140Os.45976.1.S1_x_at4/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04140Os.45976.1.S1_at2/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04160Os.29823.2.S1_x_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.3.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.1.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04170Os.37152.1.S1_at11/111+1834975..1835996expressed protein
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein
LOC_Os01g04190Os.6624.1.S1_s_at11/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_x_at9/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_at7/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.35731.2.S1_x_at5/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_x_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04230Os.45423.1.S1_at8/111+1864738..1867192Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45939.1.S1_at--107--10431Chr01:1845057..1845079 (23 bp)
TTATCTCTGGGCATGCACTGGGTTT
LOC_Os01g04190
Os.45939.1.S1_at--11--471Chr01:1845059..1845079 (21 bp)
ATCTCTGGGCATGCACTGGGTTTCG
LOC_Os01g04190
Os.45939.1.S1_at--921--3751Chr01:1845061..1845378 (25 bp)
CTCTGGGCATGCACTGGGTTTCGAA
LOC_Os01g04190
Os.45939.1.S1_at--381--9451Chr01:1845062..1845379 (25 bp)
TCTGGGCATGCACTGGGTTTCGAAC
LOC_Os01g04190
Os.45939.1.S1_at--457--8651NONE
TGGGCATGCACTGGGTTTCGAACTT
NONE
Os.45939.1.S1_at--351--211Chr01:1845438..1845462 (25 bp)
ATTTGGGATTTGCATCTGTTTGCGC
LOC_Os01g04190
Os.45939.1.S1_at--514--10851Chr01:1845440..1845464 (25 bp)
TTGGGATTTGCATCTGTTTGCGCTC
LOC_Os01g04190
Os.45939.1.S1_at--862--8631Chr01:1845441..1845465 (25 bp)
TGGGATTTGCATCTGTTTGCGCTCT
LOC_Os01g04190
Os.45939.1.S1_at--813--2411Chr02:24231305..24231358 (23 bp)
AAAAGAAGTTCATACCTTTAGCAAT
NONE
Os.45939.1.S1_at--244--1211NONE
AGTTCATACCTTTAGCAATTAGGAT
NONE
Os.45939.1.S1_at--666--11NONE
ATAGGGGGACCTTTCTTTCCATCTG
NONE
Target Sequence 
TTATCTCTGGGCATGCACTGGGTTTCGAACTTCTTTATTGGCCTCTACTTCTTGAGCGTCGTCAACAAATTCGGAATCAG
CACTGTGTATTTGGGATTTGCATCTGTTTGCGCTCTTGCTGTTGTCTACATAGCTGGAAATGTGGTTGAGACCAAGGGGC
GTTCTCTGGAAGAGATTGAGCGGGCTCTAAGTTCAGCAAGCTGATCTGCAACTCCAGCAGGTGACTGGATGGGCATTCAA
GAAAACATCCTCTGGCTTTCCGTCCAGTAGATGTTCATTCTAGTCTTGAAATAAACGAGTGGCTACTTGGCAAGTGAACT
TCTTCTTCTTCTTCTTCTTCTTCTTGTTTTNTTTTNTTTTTTTGAACTGGAGTGGCAAGTAAAGTTGGTATCTGTGAATT
GGTTGGAGCTTCGAGGGTTGTGAATTCTGGCATTTGTCAGAATAAAAGAAGTTCATACCTTTAGCAATTAGGATNGCCAG
TATGGCCACCCNCTTCTAGTGTATAGGGGGACCTTTCTTTCCATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis