Browse Element(s) Details


Os.45423.1.S1_at

Description gb:NM_184266.1
DB_XREF= gi:34895613
GEN=OSJNBa0083M16.19
TID=Os.45423.1
CNT=7
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45423 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative receptor kinase (OSJNBa0083M16.19), mRNA.
PROD=putative receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g042308/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04190Os.6624.1.S1_s_at11/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_x_at9/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_at7/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.35731.2.S1_x_at5/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_x_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04230Os.45423.1.S1_at8/111+1864738..1867192Leucine Rich Repeat family protein, expressed
LOC_Os01g04250Os.50878.1.S1_at11/111+1873715..1876705expressed protein
LOC_Os01g04250Os.45422.1.S1_x_at8/111+1873715..1876705expressed protein
LOC_Os01g04260Os.10829.1.S1_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04260Os.10829.2.S1_x_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45423.1.S1_at--54--9351Chr01:1866872..1866896 (25 bp)
TCGCACGAGTCGATGGACGAGTCCT
LOC_Os01g04230
Os.45423.1.S1_at--301--1991Chr01:1866915..1866939 (25 bp)
ACTCGCCCGCCGTGTCAGAAGGTGG
LOC_Os01g04230
Os.45423.1.S1_at--1010--1051Chr01:1866934..1866958 (25 bp)
AGGTGGCGCCATTAGCCAGTGATTA
LOC_Os01g04230
Os.45423.1.S1_at--602--7411Chr01:1866952..1866976 (25 bp)
GTGATTAATTTGTCTGTGCCTTTGT
LOC_Os01g04230
Os.45423.1.S1_at--1072--9171Chr01:1866968..1866992 (25 bp)
TGCCTTTGTGATTTGCGGTTTGGTT
LOC_Os01g04230
Os.45423.1.S1_at--618--71NONE
ATTGCTTTTGGTGTGCAGCTGATCT
NONE
Os.45423.1.S1_at--431--4751NONE
GCTGATCTGATTAGCGTCTGCTGTT
NONE
Os.45423.1.S1_at--102--1351Chr01:1867055..1867079 (25 bp)
AGAGTTCTTTCTGTACATGCATGAT
LOC_Os01g04230
Os.45423.1.S1_at--349--651Chr01:1867071..1867095 (25 bp)
ATGCATGATTGCTCTGGTTCTGATT
LOC_Os01g04230
Os.45423.1.S1_at--1077--8571NONE
TGGTTCTGATTCGTTTTGCTGTTTT
NONE
Os.45423.1.S1_at--61--10451Chr01:1867112..1867136 (25 bp)
TTAGTAGCACCCGTTTTAGAATGAT
LOC_Os01g04230
Target Sequence 
TCGCACGAGTCGATGGACGAGTCCTCCGGCGTGTCCGTGTCCGACTCGCCCGCCGTGTCAGAAGGTGGCGCCATTAGCCA
GTGATTAATTTGTCTGTGCCTTTGTGATTTGCGGTTTGGTTTACTTTGGGATTGCTTTTGGTGTGCAGCTGATCTGATTA
GCGTCTGCTGTTGGATGGTGTTAAGAGTTCTTTCTGTACATGCATGATTGCTCTGGTTCTGATTCGTTTTGCTGTTTTTT
TTAGTAGCACCCGTTTTAGAATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis