Browse Element(s) Details


Os.25441.1.S1_a_at

Description gb:AK101232.1
DB_XREF= gi:32986441
TID=Os.25441.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25441 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050P03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033031J06, full insert sequence.
FL= gb:AK101232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0420010/11metallo-beta-lactamase superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04160Os.29823.2.S1_x_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.3.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.1.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04170Os.37152.1.S1_at11/111+1834975..1835996expressed protein
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein
LOC_Os01g04190Os.6624.1.S1_s_at11/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_x_at9/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_at7/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.35731.2.S1_x_at5/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_x_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04230Os.45423.1.S1_at8/111+1864738..1867192Leucine Rich Repeat family protein, expressed
LOC_Os01g04250Os.50878.1.S1_at11/111+1873715..1876705expressed protein
LOC_Os01g04250Os.45422.1.S1_x_at8/111+1873715..1876705expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25441.1.S1_a_at--763--2071Chr01:1850735..1850759 (25 bp)
ACATTGGACAATAGAGCTGGTGGCA
LOC_Os01g04200
Os.25441.1.S1_a_at--123--5311NONE
GAAGGACTACTTTCAAACTACATAC
NONE
Os.25441.1.S1_a_at--123--3131Chr01:1851034..1851058 (25 bp)
AATTTCTTGGACATGTCACCGCACG
LOC_Os01g04200
Os.25441.1.S1_a_at--927--1791Chr01:1851051..1851075 (25 bp)
ACCGCACGTGCTGATTCCAATGCAT
LOC_Os01g04200
Os.25441.1.S1_a_at--951--8151Chr01:1851076..1851100 (25 bp)
GGAAGAATCAACCTATGGCCCAAAC
LOC_Os01g04200
Os.25441.1.S1_a_at--4--10111Chr01:1851089..1851113 (25 bp)
TATGGCCCAAACATATGCTTTGTGG
LOC_Os01g04200
Os.25441.1.S1_a_at--570--631Chr01:1851103..1851123 (21 bp)
ATGCTTTGTGGATACCTCAGGCACC
LOC_Os01g04200
Os.25441.1.S1_a_at--192--6491Chr01:1851113..1851416 (25 bp)
GATACCTCAGGCACCGAAGGGCAAG
LOC_Os01g04200
Os.25441.1.S1_a_at--859--7611Chr01:1851416..1851440 (25 bp)
GGGAAGTGTCCATTCTACAGTCTAT
LOC_Os01g04200
Os.25441.1.S1_a_at--661--8311Chr01:1851450..1851474 (25 bp)
GGCTCGGACTCTGTTTGACATAGTT
LOC_Os01g04200
Os.25441.1.S1_a_at--464--10111Chr01:1851506..1851530 (25 bp)
TATGGATTCCTGCTTCTTTCAATGT
LOC_Os01g04200
Target Sequence 
ACATTGGACAATAGAGCTGGTGGCAACATGAAGGACTACTTTCAAACTACATACAATTTCTTGGACATGTCACCGCACGT
GCTGATTCCAATGCATGGAAGAATCAACCTATGGCCCAAACATATGCTTTGTGGATACCTCAGGCACCGAAGGGCAAGGG
AAGTGTCCATTCTACAGTCTATAGAGAATGGGGCTCGGACTCTGTTTGACATAGTTTCAAAAANTTATGCTGATGTAGAT
AGGAAATTATGGATTCCTGCTTCTTTCAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25441.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis