Browse Element(s) Details


OsAffx.23106.1.S1_at

Description tigr:9629.m00334
TID=OsAffx.23106.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0418010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04130Os.35230.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04130OsAffx.1926.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04140Os.45976.1.S1_x_at4/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04140Os.45976.1.S1_at2/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04160Os.29823.2.S1_x_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.3.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.1.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04170Os.37152.1.S1_at11/111+1834975..1835996expressed protein
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein
LOC_Os01g04190Os.6624.1.S1_s_at11/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_x_at9/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_at7/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.35731.2.S1_x_at5/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_x_at11/111+1861280..1862911hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23106.1.S1_at--1034--9251Chr01:1838083..1838107 (25 bp)
TCCTCTTTCTCGCTGACAGTGATAG
LOC_Os01g04180
OsAffx.23106.1.S1_at--227--7651Chr01:1838006..1838030 (25 bp)
GGGATTGTCCCATCCTATAAACCAA
LOC_Os01g04180
OsAffx.23106.1.S1_at--234--2651NONE
AACCAAACATTACTCGACGGATCGG
NONE
OsAffx.23106.1.S1_at--908--1271Chr01:1836987..1837011 (25 bp)
AGATCGAGCAGATAGCCAGGCCGCT
LOC_Os01g04180
OsAffx.23106.1.S1_at--346--2271Chr01:1836931..1836955 (25 bp)
AAATCACTCGTACTCACTGTGAGAG
LOC_Os01g04180
OsAffx.23106.1.S1_at--1053--6031Chr01:1836466..1836489 (24 bp)
GAGATCGATCAACCGCATCACATGG
LOC_Os01g04180
OsAffx.23106.1.S1_at--62--311Chr01:1836429..1836453 (25 bp)
ATACTGACTCGATCGTTACTACGGG
LOC_Os01g04180
OsAffx.23106.1.S1_at--844--3711Chr01:1836411..1836435 (25 bp)
CTACGGGCACGATCAAGTGGCAGTT
LOC_Os01g04180
OsAffx.23106.1.S1_at--708--1591Chr01:1836365..1836389 (25 bp)
AGCCTACGCGGGATACGAGCACGGT
LOC_Os01g04180
OsAffx.23106.1.S1_at--732--6451Chr01:1836340..1836364 (25 bp)
GATCAACTCGATCGACGCACAAGCC
LOC_Os01g04180
OsAffx.23106.1.S1_at--744--5451Chr01:1836297..1836321 (25 bp)
GAACGTTTCAGAGTCACACGGTCTC
LOC_Os01g04180
Target Sequence 
TCCTCTTTCTCGCTGACAGTGATAGCAAACGGCACTCATCCCATCTGTAGCTCATCCCTTCAACCAAACAAAAAATTGGG
ATTGTCCCATCCTATAAACCAAACATTACTCGACGGATCGGATAAAGAAATGAATGCAGATCGAGCAGATAGCCAGGCCG
CTGATGAGGAAATAAATAACCACACGAGCAGTAAAATCACTCGTACTCACTGTGAGAGTGAGATCGATCAACCGCATCAC
ATGGACTATAAATCGTATACTGACTCGATCGTTACTACGGGCACGATCAAGTGGCAGTTGAATAGTAACGGCAAAAAGGG
AGCCTACGCGGGATACGAGCACGGTGATCAACTCGATCGACGCACAAGCCGCACAGGCCAGAAACTGAGAACGTTTCAGA
GTCACACGGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis