Browse Element(s) Details


OsAffx.1927.1.S1_at

Description tigr:9629.m00339
TID=OsAffx.1927.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0421011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04160Os.29823.2.S1_x_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.3.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.1.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04170Os.37152.1.S1_at11/111+1834975..1835996expressed protein
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein
LOC_Os01g04190Os.6624.1.S1_s_at11/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_x_at9/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_at7/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.35731.2.S1_x_at5/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_x_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04230Os.45423.1.S1_at8/111+1864738..1867192Leucine Rich Repeat family protein, expressed
LOC_Os01g04250Os.50878.1.S1_at11/111+1873715..1876705expressed protein
LOC_Os01g04250Os.45422.1.S1_x_at8/111+1873715..1876705expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1927.1.S1_at--457--3831Chr01:1854676..1854700 (25 bp)
CTGCTGGACATGTCGAACGAGCGGT
LOC_Os01g04210
OsAffx.1927.1.S1_at--673--2111Chr01:1854683..1854707 (25 bp)
ACATGTCGAACGAGCGGTTCGCGCT
LOC_Os01g04210
OsAffx.1927.1.S1_at--1044--1771Chr01:1854745..1854769 (25 bp)
ACCGTGTACGCGCACCTGACGGGCT
LOC_Os01g04210
OsAffx.1927.1.S1_at--175--1771Chr01:1854758..1854782 (25 bp)
ACCTGACGGGCTCCAACGACAGCTT
LOC_Os01g04210
OsAffx.1927.1.S1_at--190--2131Chr01:1854821..1854845 (25 bp)
ACAGGCAGGACGTGTTCGCGCCCCA
LOC_Os01g04210
OsAffx.1927.1.S1_at--587--6331Chr01:1854953..1854977 (25 bp)
GATGCAGGCACTGCGTCATCGACGA
LOC_Os01g04210
OsAffx.1927.1.S1_at--779--931Chr01:1854958..1854982 (25 bp)
AGGCACTGCGTCATCGACGAGCACT
LOC_Os01g04210
OsAffx.1927.1.S1_at--1160--4011Chr01:1855095..1855119 (25 bp)
CGTCACCGAGGAGCTTTTGAGGAAG
LOC_Os01g04210
OsAffx.1927.1.S1_at--688--2571Chr01:1855150..1855174 (25 bp)
AACGGCGCGCCCAGTGATATCTGCT
LOC_Os01g04210
OsAffx.1927.1.S1_at--42--4571Chr01:1855156..1855180 (25 bp)
GCGCCCAGTGATATCTGCTTCGTGT
LOC_Os01g04210
OsAffx.1927.1.S1_at--1153--3451Chr01:1855161..1855185 (25 bp)
CAGTGATATCTGCTTCGTGTTCGCG
LOC_Os01g04210
Target Sequence 
CTGCTGGACATGTCGAACGAGCGGTTCGCGCTGCTGTCCGAGTCGTGCATCCCAATCTTCGACTTCCCCACCGTGTACGC
GCACCTGACGGGCTCCAACGACAGCTTCGTCGACTGCTTCGACAACAACGGCGCCATGGCGCGGTACAGGCAGGACGTGT
TCGCGCCCCACAACATCACGCAGGCGCAGTGGCGCAAGGGCTCCCAGTGGTTCGAGATGGACCGCGCCCTCGCCGTCGAG
GTCGTCTCCGACGAGGCCTACTTCCCGGCGTTCCGGGGATGCAGGCACTGCGTCATCGACGAGCACTACATCCCGACGCT
GGTGAGCCTTCTCCGGTGGCGCCGCAACGCCAACCGGACGCTCACGTACATGGAGTGGCGGCCGAGGTCGCCGCACCCGA
GGAGCCACGGCGCACGGGACGTCACCGAGGAGCTTTTGAGGAAGATGAGGAGCAGCGCCGCCAACTGCACCTACAACGGC
GCGCCCAGTGATATCTGCTTCGTGTTCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis