Browse Element(s) Details


OsAffx.10902.1.S1_x_at

Description tigr:9629.m00340
TID=OsAffx.10902.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0422011/11hypothetical protein
LOC_Os01g042101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein
LOC_Os01g04190Os.6624.1.S1_s_at11/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_x_at9/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_at7/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.35731.2.S1_x_at5/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_x_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04230Os.45423.1.S1_at8/111+1864738..1867192Leucine Rich Repeat family protein, expressed
LOC_Os01g04250Os.50878.1.S1_at11/111+1873715..1876705expressed protein
LOC_Os01g04250Os.45422.1.S1_x_at8/111+1873715..1876705expressed protein
LOC_Os01g04260Os.10829.1.S1_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04260Os.10829.2.S1_x_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10902.1.S1_x_at--317--2611Chr01:1862315..1862339 (25 bp)
AACGCGCTGCTGGACCTATCAAACG
LOC_Os01g04220
OsAffx.10902.1.S1_x_at--1082--8531Chr01:1862325..1862349 (25 bp)
TGGACCTATCAAACGAGCGCTTCGC
LOC_Os01g04220
OsAffx.10902.1.S1_x_at--161--9671Chr01:1862406..1862430 (25 bp)
TCACCGGATCCAACGACAGCTTCGT
LOC_Os01g04220
OsAffx.10902.1.S1_x_at--573--2152Chr01:1862421..1862445 (25 bp)
ACAGCTTCGTCGACTGCTTCGACAA
LOC_Os01g04220
OsAffx.10902.1.S1_x_at--217--7251Chr01:1862521..1862545 (25 bp)
GTCCCAGTTCTTCGAGATGGACCGC
LOC_Os01g04220
OsAffx.10902.1.S1_x_at--715--2612Chr01:1862684..1862708 (25 bp)
AACCGGACGCTCACGTACACGGAGT
LOC_Os01g04220
OsAffx.10902.1.S1_x_at--97--9671Chr01:1862754..1862778 (25 bp)
TCACCGAGGAGCTCTTCGGGAAGAT
LOC_Os01g04220
OsAffx.10902.1.S1_x_at--201--4711Chr01:1862784..1862808 (25 bp)
GCGGCGCCGGCAACTGCACGTACAA
LOC_Os01g04220
OsAffx.10902.1.S1_x_at--604--2551Chr01:1862795..1862819 (25 bp)
AACTGCACGTACAACGGCAAGGCTA
LOC_Os01g04220
OsAffx.10902.1.S1_x_at--98--2951Chr01:1862813..1862837 (25 bp)
AAGGCTAGCGACGTTTGCTTCGTGT
LOC_Os01g04220
OsAffx.10902.1.S1_x_at--893--10271Chr01:1862826..1862850 (25 bp)
TTTGCTTCGTGTTCGCGCGCAAGTT
LOC_Os01g04220
Target Sequence 
AACGCGCTGCTGGACCTATCAAACGAGCGCTTCGCGCTGCTGTCCGAGTCGTGCATCCCCATCTTCGACTTCCCCACCTT
GTACGCTCACCTCACCGGATCCAACGACAGCTTCGTCGACTGCTTCGACAACGCCGGCGCCCGCGCGCGCTACAGGCCGG
CGCTGTTCGCGCCGCACAACATCACGGCGGCGCAGTGGCGCAAGGGGTCCCAGTTCTTCGAGATGGACCGCGCCCTCGCC
GTCGAGGTCGTCTCCGACGAGCGCTACTTCCCGGCGTTCCGCGACTCCTGCGCCGGGCGCAGGGGCTGCCTCATCGACGA
GCACTACATCCCGACGCTGGTCAGCCTGCTCCGGTGGCGCCGCAACGCCAACCGGACGCTCACGTACACGGAGTGGCGGC
CGAGGAGGCCTCACCCGAGGAGCCACGGCGCACGGGACGTCACCGAGGAGCTCTTCGGGAAGATGAGGGGCGGCGCCGGC
AACTGCACGTACAACGGCAAGGCTAGCGACGTTTGCTTCGTGTTCGCGCGCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10902.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis