Browse Element(s) Details


Os.10829.2.S1_x_at

Description gb:NM_184268.1
DB_XREF= gi:34895617
GEN=OSJNBa0083M16.22
TID=Os.10829.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10829 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative sterol-C5(6)-desaturase (OSJNBa0083M16.22), mRNA.
PROD=putative sterol-C5(6)-desaturase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0426011/11Delta-7-sterol-C5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04220OsAffx.10902.1.S1_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04220OsAffx.10902.1.S1_x_at11/111+1861280..1862911hypothetical protein
LOC_Os01g04230Os.45423.1.S1_at8/111+1864738..1867192Leucine Rich Repeat family protein, expressed
LOC_Os01g04250Os.50878.1.S1_at11/111+1873715..1876705expressed protein
LOC_Os01g04250Os.45422.1.S1_x_at8/111+1873715..1876705expressed protein
LOC_Os01g04260Os.10829.1.S1_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04260Os.10829.2.S1_x_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04270OsAffx.1928.1.S1_s_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04270OsAffx.1928.1.S1_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04280Os.28514.1.S1_at11/111+1899538..1902042calmodulin-binding protein, putative, expressed
LOC_Os01g04290Os.36438.1.S1_at5/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04290OsAffx.14829.2.S1_x_at1/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04300Os.6014.2.S1_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300Os.6014.2.S1_x_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300OsAffx.14829.2.S1_x_at1/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016126biological_processsterol biosynthesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0000248molecular_functionC-5 sterol desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10829.2.S1_x_at--561--8611Chr01:1885592..1885616 (25 bp)
TGGTGCTTCGTCATCTACTACTGGA
LOC_Os01g04260
Os.10829.2.S1_x_at--450--2311Chr01:1887809..1887833 (25 bp)
AAAGGCTATGCCTCTCTATTGTGCC
LOC_Os01g04260
Os.10829.2.S1_x_at--652--6611Chr01:1887900..1887924 (25 bp)
GTTGGTTGGCCAATGTACCTGGTTT
LOC_Os01g04260
Os.10829.2.S1_x_at--166--6991Chr01:1887914..1887938 (25 bp)
GTACCTGGTTTATCTGGCTTTATAT
LOC_Os01g04260
Os.10829.2.S1_x_at--33--8751Chr01:1888000..1888024 (25 bp)
TGTACAAGTACCTGCACACATACCA
LOC_Os01g04260
Os.10829.2.S1_x_at--769--5231Chr01:1888043..1888065 (23 bp)
GAATACCCTATCACCATTTGCAGAG
LOC_Os01g04260
Os.10829.2.S1_x_at--541--10271Chr01:1888059..1888558 (25 bp)
TTTGCAGAGGCCGTGTGGACAACTA
LOC_Os01g04260
Os.10829.2.S1_x_at--436--9811Chr01:1888557..1888581 (25 bp)
TAACATCCATGACTGCATTCACGGC
LOC_Os01g04260
Os.10829.2.S1_x_at--326--3971Chr01:1888592..1888616 (25 bp)
CGGTCATGGGTGCTGGCTATCACAC
LOC_Os01g04260
Os.10829.2.S1_x_at--324--2531Chr01:1888642..1888666 (25 bp)
AACTATGGCCACTACACCGTGTGGA
LOC_Os01g04260
Os.10829.2.S1_x_at--149--6231Chr01:1888665..1888689 (25 bp)
GATGGACTGGATGTTCGGCACCCTT
LOC_Os01g04260
Target Sequence 
TGGTGCTTCGTCATCTACTACTGGAAGCGCCACGCCTACATCCCCAAAGATTCTATACCTACAATCGAAGCTATGAAGAA
GCAAATAATTGTTGCATCAAAGGCTATGCCTCTCTATTGTGCCCTTCCAACCTTATCTGAGTACATGGTTGAGAATGGAT
GGACACAGTGTTATGTTAATATCAGTGAAGTTGGTTGGCCAATGTACCTGGTTTATCTGGCTTTATATCTTATCTTTGTT
GAGTTTGGAATTTACTGGATGCACAGAGAGTTGCATGACATAAAGCCATTGTACAAGTACCTGCACACATACCACCATAT
TTACAACAAGGAGAATACCCTATCACCATTTGCAGAGGCCGTGTGGACAACTAACATCCATGACTGCATTCACGGCAAGG
TTTGGCCGGTCATGGGTGCTGGCTATCACACCATTCACCATACAACATACCGTCACAACTATGGCCACTACACCGTGTGG
ATGGACTGGATGTTCGGCACCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10829.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis