Browse Element(s) Details


OsAffx.1928.1.S1_s_at

Description tigr:9629.m00345
TID=OsAffx.1928.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0427011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04250Os.50878.1.S1_at11/111+1873715..1876705expressed protein
LOC_Os01g04250Os.45422.1.S1_x_at8/111+1873715..1876705expressed protein
LOC_Os01g04260Os.10829.1.S1_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04260Os.10829.2.S1_x_at11/111+1885327..1889100Delta-7-sterol-C5, putative, expressed
LOC_Os01g04270OsAffx.1928.1.S1_s_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04270OsAffx.1928.1.S1_at11/111+1893879..1894118hypothetical protein
LOC_Os01g04280Os.28514.1.S1_at11/111+1899538..1902042calmodulin-binding protein, putative, expressed
LOC_Os01g04290Os.36438.1.S1_at5/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04290OsAffx.14829.2.S1_x_at1/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04300Os.6014.2.S1_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300Os.6014.2.S1_x_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300OsAffx.14829.2.S1_x_at1/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04310NANA1+1916551..1917233transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1928.1.S1_s_at--902--8451Chr01:1894039..1894063 (25 bp)
TGGCCACCACAATGCTGAGGAGACG
LOC_Os01g04270
OsAffx.1928.1.S1_s_at--902--8431Chr01:1894038..1894062 (25 bp)
GGCCACCACAATGCTGAGGAGACGT
LOC_Os01g04270
OsAffx.1928.1.S1_s_at--446--1711Chr01:1894034..1894058 (25 bp)
ACCACAATGCTGAGGAGACGTGCCC
LOC_Os01g04270
OsAffx.1928.1.S1_s_at--772--2231Chr01:1894031..1894055 (25 bp)
ACAATGCTGAGGAGACGTGCCCGCC
LOC_Os01g04270
OsAffx.1928.1.S1_s_at--361--3011Chr01:1894029..1894053 (25 bp)
AATGCTGAGGAGACGTGCCCGCCAC
LOC_Os01g04270
OsAffx.1928.1.S1_s_at--1004--9111Chr01:1894027..1894051 (25 bp)
TGCTGAGGAGACGTGCCCGCCACTG
LOC_Os01g04270
OsAffx.1928.1.S1_s_at--444--8891Chr01:1894024..1894048 (25 bp)
TGAGGAGACGTGCCCGCCACTGCAT
LOC_Os01g04270
OsAffx.1928.1.S1_s_at--238--4431Chr01:1893984..1894008 (25 bp)
GCCATGTCGAGGAGCCACATCTACC
LOC_Os01g04270
OsAffx.1928.1.S1_s_at--675--4371Chr01:1893970..1893994 (25 bp)
CCACATCTACCACCGCTGTGTTGAA
LOC_Os01g04270
OsAffx.1928.1.S1_s_at--527--3551Chr01:1893967..1893991 (25 bp)
CATCTACCACCGCTGTGTTGAAAGA
LOC_Os01g04270
OsAffx.1928.1.S1_s_at--743--9531Chr01:1893965..1893989 (25 bp)
TCTACCACCGCTGTGTTGAAAGATG
LOC_Os01g04270
Target Sequence 
TGGCCACCACAATGCTGAGGAGACGTGCCCGCCACTGCATGGCCACCGTGCTGCCGCCATGTCGAGGAGCCACATCTACC
ACCGCTGTGTTGAAAGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1928.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis