Browse Element(s) Details


Os.29823.1.S1_at

Description gb:AK109801.1
DB_XREF= gi:32995010
TID=Os.29823.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0083M16.12 (OSJNBa0083M16.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-F06, full insert sequence.
FL= gb:AK109801.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0416011/11expressed protein
LOC_Os03g079101/11hydrolase, carbon-nitrogen family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04130Os.35230.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04130OsAffx.1926.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04140Os.45976.1.S1_x_at4/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04140Os.45976.1.S1_at2/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04160Os.29823.2.S1_x_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.3.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.1.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04170Os.37152.1.S1_at11/111+1834975..1835996expressed protein
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein
LOC_Os01g04190Os.6624.1.S1_s_at11/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_x_at9/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_at7/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.35731.2.S1_x_at5/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006807biological_processnitrogen compound metabolism
GO:0009446biological_processputrescine biosynthesis
GO:0000257molecular_functionnitrilase activity
GO:0016810molecular_functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0050126molecular_functionN-carbamoylputrescine amidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29823.1.S1_at--630--8492Chr03:4005259..4005308 (24 bp)
TGTTACCAGGTCAGTTTAAAATATC
LOC_Os03g07910
Os.29823.1.S1_at--18--7831Chr01:1832864..1832888 (25 bp)
GGTCAGTTTAAAATATCAGCATGCT
LOC_Os01g04160
Os.29823.1.S1_at--762--10491Chr01:1832871..1832895 (25 bp)
TTAAAATATCAGCATGCTGCTGCAA
LOC_Os01g04160
Os.29823.1.S1_at--855--3811Chr01:1832887..1832911 (25 bp)
CTGCTGCAATGTCAACTGTTAAATT
LOC_Os01g04160
Os.29823.1.S1_at--1074--171Chr01:1832909..1832933 (25 bp)
ATTTATGGTTTTTGCCATTTGCCTT
LOC_Os01g04160
Os.29823.1.S1_at--1052--8571Chr01:1832914..1832938 (25 bp)
TGGTTTTTGCCATTTGCCTTTACAT
LOC_Os01g04160
Os.29823.1.S1_at--809--6811Chr01:1832916..1832940 (25 bp)
GTTTTTGCCATTTGCCTTTACATCA
LOC_Os01g04160
Os.29823.1.S1_at--464--10691Chr01:1832920..1832944 (25 bp)
TTGCCATTTGCCTTTACATCATAAA
LOC_Os01g04160
Os.29823.1.S1_at--271--2991Chr01:1832943..1832967 (25 bp)
AATGTAATCTTGTTAAATTGTAGCA
LOC_Os01g04160
Os.29823.1.S1_at--420--9831Chr01:1832956..1832980 (25 bp)
TAAATTGTAGCAACACCTCTTTCAA
LOC_Os01g04160
Os.29823.1.S1_at--368--2231Chr01:1832980..1833004 (25 bp)
ACAATAAACATGTGATGGTTATACA
LOC_Os01g04160
Target Sequence 
TGTTACCAGGTCAGTTTAAAATATCAGCATGCTGCTGCAATGTCAACTGTTAAATTTATGGTTTTTGCCATTTGCCTTTA
CATCATAAATGTAATCTTGTTAAATTGTAGCAACACCTCTTTCAACAATAAACATGTGATGGTTATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis