Browse Element(s) Details


Os.29823.3.S1_at

Description gb:NM_184259.1
DB_XREF= gi:34895599
GEN=OSJNBa0083M16.12
TID=Os.29823.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.29823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0083M16.12 (OSJNBa0083M16.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0083M16.12 (OSJNBa0083M16.12), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0416011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04130Os.35230.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04130OsAffx.1926.1.S1_at9/111+1809784..1814403peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g04140Os.45976.1.S1_x_at4/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04140Os.45976.1.S1_at2/111+1816330..1819318transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04150Os.46306.1.S1_x_at6/111+1822238..1826175transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g04160Os.29823.2.S1_x_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.3.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04160Os.29823.1.S1_at11/111+1830912..1834213expressed protein
LOC_Os01g04170Os.37152.1.S1_at11/111+1834975..1835996expressed protein
LOC_Os01g04180OsAffx.23106.1.S1_at10/111+1836254..1838536hypothetical protein
LOC_Os01g04190Os.6624.1.S1_s_at11/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_x_at9/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.45939.1.S1_at7/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04190Os.35731.2.S1_x_at5/111+1840680..1845906hexose transporter, putative, expressed
LOC_Os01g04200Os.25441.1.S1_a_at10/111+1846639..1853053metallo-beta-lactamase superfamily protein, expressed
LOC_Os01g04210OsAffx.1927.1.S1_at11/111+1853906..1855254hypothetical protein
LOC_Os01g04210Os.32122.1.S1_x_at1/111+1853906..1855254hypothetical protein
LOC_Os01g04210OsAffx.10902.1.S1_x_at1/111+1853906..1855254hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29823.3.S1_at--552--6231Chr01:1833685..1833709 (25 bp)
GATGGCGCGTGATTTCAAGCTGTTA
LOC_Os01g04160
Os.29823.3.S1_at--264--10451Chr01:1833707..1833731 (25 bp)
TTAGAAGCTAGGCTCCACAGCATCG
LOC_Os01g04160
Os.29823.3.S1_at--413--3311Chr01:1833722..1833746 (25 bp)
CACAGCATCGGAGAAGCCATTTCAA
LOC_Os01g04160
Os.29823.3.S1_at--296--10711Chr01:1833755..1833779 (25 bp)
TTGCTGTTAGGCAATAGCCCCTTGT
LOC_Os01g04160
Os.29823.3.S1_at--1004--3091Chr01:1833767..1833791 (25 bp)
AATAGCCCCTTGTCTACCAAAACAT
LOC_Os01g04160
Os.29823.3.S1_at--548--2351Chr01:1833897..1833921 (25 bp)
AAACCAACTTCATATTCGACTGCAT
LOC_Os01g04160
Os.29823.3.S1_at--452--3151Chr01:1833942..1833966 (25 bp)
AATTCTGCGATTTCGGCAAATGCGG
LOC_Os01g04160
Os.29823.3.S1_at--633--5991Chr01:1833982..1834006 (25 bp)
GAGACTGCCTCTCAGTTTGACTGAA
LOC_Os01g04160
Os.29823.3.S1_at--1124--2011Chr01:1834064..1834088 (25 bp)
ACTACACCCAATCGAGTTGCTGAGA
LOC_Os01g04160
Os.29823.3.S1_at--1106--6611Chr01:1834093..1834117 (25 bp)
GTTGGACCAAATGACTCCCAGGTGG
LOC_Os01g04160
Os.29823.3.S1_at--915--9311Chr01:1834108..1834132 (25 bp)
TCCCAGGTGGGATGCATGTCAAGTG
LOC_Os01g04160
Target Sequence 
GATGGCGCGTGATTTCAAGCTGTTAGAAGCTAGGCTCCACAGCATCGGAGAAGCCATTTCAAATGCTGAATTGCTGTTAG
GCAATAGCCCCTTGTCTACCAAAACATCAAATCTATCACTCCATTGTTTTATCATTGAAATGCTTGAAGTTATTATGGAT
TTATTTGGTGGGTCAAAGAGCTTAGGTCTCACAGAAGAAAAGAAGTATCAACAAACCAACTTCATATTCGACTGCATTAT
TGAATCAGTGAATTCAAAATTCTGCGATTTCGGCAAATGCGGATACAAGGCATGGTTGAGACTGCCTCTCAGTTTGACTG
AAGATCTGTTGAAGAGGGAGATATCGAAGGAGATCTGCAATTGGAGGGAAACTAGAGAAACTACACCCAATCGAGTTGCT
GAGAAAGAGTTGGACCAAATGACTCCCAGGTGGGATGCATGTCAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29823.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis