Browse Element(s) Details


Os.9964.1.S1_at

Description gb:D55710.1
DB_XREF= gi:2696224
TID=Os.9964.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.9964 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete cds.
PROD=chitinase
FL= gb:D55710.1 gb:AK106319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4755011/11Xylanase inhibitor protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47470Os.27639.1.S1_x_at2/1111+28150033..28153819retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g47480OsAffx.19424.1.S1_at10/1111+28155307..28157423hypothetical protein
LOC_Os11g47490OsAffx.19425.1.S1_at11/1111+28160381..28161239Senescence-induced receptor-like serine/threonine-protein kinaseprecursor, putative
LOC_Os11g47494NANA11+28162148..28162654hypothetical protein
LOC_Os11g47500Os.172.1.S1_a_at11/1111+28164543..28166059Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47510Os.4670.1.S1_at11/1111+28169475..28170818Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47520Os.25636.1.S1_at11/1111+28172142..28173317Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47530Os.169.1.S1_at11/1111+28175114..28176274Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47550Os.9964.1.S1_at11/1111+28177983..28179140Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.50837.1.S1_at11/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47560Os.49578.1.S1_x_at1/1111+28181613..28182631Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.49578.1.S1_x_at11/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.50837.1.S1_at2/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47580Os.9347.1.S1_at11/1111+28195854..28197103Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47590Os.51920.1.S1_at11/1111+28197991..28199150Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47600Os.32890.1.S1_at11/1111+28200834..28202000Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9964.1.S1_at--658--4812Chr11:28178550..28178574 (25 bp)
GCTCTACAGCTACAGAAACAACAAG
LOC_Os11g47550
Os.9964.1.S1_at--736--9451Chr11:28178681..28178705 (25 bp)
TCGGCGACGACGTGAACTGCACGGC
LOC_Os11g47550
Os.9964.1.S1_at--113--8111Chr11:28178790..28178814 (25 bp)
GGACCCGGGATACCTGTCGCCCAAG
LOC_Os11g47550
Os.9964.1.S1_at--551--2651Chr11:28178812..28178836 (25 bp)
AAGCCACTCTACTACACGCTGGTGA
LOC_Os11g47550
Os.9964.1.S1_at--1007--7391Chr11:28178833..28178857 (25 bp)
GTGATGTACATCAGAGACAGGCTCA
LOC_Os11g47550
Os.9964.1.S1_at--915--5651Chr11:28178848..28178872 (25 bp)
GACAGGCTCAACTACGGTGGCAAGA
LOC_Os11g47550
Os.9964.1.S1_at--1022--5351Chr11:28178898..28178922 (25 bp)
GAAGACCGACTACTCCATTGGAAAA
LOC_Os11g47550
Os.9964.1.S1_at--751--231Chr11:28178939..28178963 (25 bp)
ATATATACTCCTTTTTCCATTGGGA
LOC_Os11g47550
Os.9964.1.S1_at--120--8291Chr11:28179012..28179036 (25 bp)
GGCTTAATTTCTAGCTATATGGAAT
LOC_Os11g47550
Os.9964.1.S1_at--1122--5231Chr11:28179033..28179057 (25 bp)
GAATAATGTAATCCCATGTCGCAAT
LOC_Os11g47550
Os.9964.1.S1_at--364--10171Chr11:28179112..28179136 (25 bp)
TATCAATAAAGTTCACTGCATGTGA
LOC_Os11g47550
Target Sequence 
GCTCTACAGCTACAGAAACAACAAGGGGAAGGGGGTGATGCTGACGGCGACGCCGCGGTGCAGGTTCCCGGACCGGCGGC
TGGAGAAGGCGCTGGCGACGGGGGTGTTCGCGCGCATCCACGTGAGGATGTTCGGCGACGACGTGAACTGCACGGCGGCG
CCGAGGGAGTCGTGGGAGAAGTGGGCGGCGGCGTACCCGGCGAGCCAGGTGTACCTCGGGCTGGTGGCCTCGTCGGAGCA
GGACCCGGGATACCTGTCGCCCAAGCCACTCTACTACACGCTGGTGATGTACATCAGAGACAGGCTCAACTACGGTGGCA
AGATGATCTGGGACAGNTACTACNACAAGAAGACCGACTACTCCATTGGAAAACTTATTTAAAACCTATATATATACTCC
TTTTTCCATTGGGAGCATGGAGATATATATATATATATATATATATACCAAGTATTGAATANGGCTTAATTTCTAGCTAT
ATGGAATAATGTAATCCCATGTCGCAATTAAATAAGGGTGATTATCTAAATTGTTGTTGTTTTTTGTAATCCTCCAAAAT
AATATCAATAAAGTTCACTGCATGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9964.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis