Browse Element(s) Details


Os.51307.1.S1_at

Description gb:AY305866.1
DB_XREF= gi:32172481
GEN=ZFP17
TID=Os.51307.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51307 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP17 (ZFP17) mRNA, complete cds.
PROD=C2H2 type zinc finger transcription factorZFP17
FL= gb:AY305866.1 gb:AK105226.1 gb:AK062491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4763011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g47570Os.49578.1.S1_x_at11/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47570Os.50837.1.S1_at2/1111+28190097..28190950Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os11g47580Os.9347.1.S1_at11/1111+28195854..28197103Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47590Os.51920.1.S1_at11/1111+28197991..28199150Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47600Os.32890.1.S1_at11/1111+28200834..28202000Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47610Os.53617.1.S1_at11/1111+28202408..28203600Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os11g47620OsAffx.7443.1.S1_at11/1111+28204625..28205116Zinc finger, C2H2 type family protein
LOC_Os11g47630Os.51307.1.S1_at11/1111+28208091..28208934Zinc finger, C2H2 type family protein, expressed
LOC_Os11g47640OsAffx.19426.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640Os.52655.1.S1_x_at2/1111+28211601..28215464expressed protein
LOC_Os11g47640OsAffx.14237.1.S1_at1/1111+28211601..28215464expressed protein
LOC_Os11g47650Os.9833.1.S1_at11/1111+28216432..28219984expressed protein
LOC_Os11g47650Os.54085.1.S1_at3/1111+28216432..28219984expressed protein
LOC_Os11g47660OsAffx.19427.1.S1_at11/1111+28221817..28222928hypothetical protein
LOC_Os11g47660Os.24409.1.S1_at1/1111+28221817..28222928hypothetical protein
LOC_Os11g47670Os.55400.2.S1_at11/1111+28223321..28224191Thaumatin family protein, expressed
LOC_Os11g47680OsAffx.19428.1.S1_s_at11/1111+28225195..28225949Thaumatin family protein, expressed
LOC_Os11g47690OsAffx.19429.1.S1_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47690OsAffx.19429.1.S1_x_at11/1111+28226147..28226659Zinc finger, C3HC4 type family protein
LOC_Os11g47700OsAffx.19430.1.S1_at11/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47700OsAffx.19429.1.S1_x_at1/1111+28227272..28227784Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g47710Os.8885.1.S1_at11/1111+28228023..28230234Charged multivesicular body protein 2a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51307.1.S1_at--175--10491Chr11:28208831..28208855 (25 bp)
TTAAGCTCATTAGTTTACCGACGAT
LOC_Os11g47630
Os.51307.1.S1_at--258--9971Chr11:28208816..28208840 (25 bp)
TACCGACGATGGAAGTGGCCACCAA
LOC_Os11g47630
Os.51307.1.S1_at--381--7551Chr11:28208802..28208826 (25 bp)
GTGGCCACCAATACGGCGACACGAT
LOC_Os11g47630
Os.51307.1.S1_at--35--1891Chr11:28208782..28208806 (25 bp)
ACGATCGCCGGTGAAGCTAATGCTG
LOC_Os11g47630
Os.51307.1.S1_at--142--9771Chr11:28208765..28208789 (25 bp)
TAATGCTGGTGCTGACACTGTCGCC
LOC_Os11g47630
Os.51307.1.S1_at--151--611Chr11:28208662..28208686 (25 bp)
ATGCGGGCGGCGGTTCTCCACGTTC
LOC_Os11g47630
Os.51307.1.S1_at--667--9031Chr11:28208516..28208540 (25 bp)
TGCACCGGTGCGACATGTGCGGCAA
LOC_Os11g47630
Os.51307.1.S1_at--513--4211Chr11:28208442..28208466 (25 bp)
CCGCTGGTGAGTCGTAATGGCACAA
LOC_Os11g47630
Os.51307.1.S1_at--335--2971Chr11:28208427..28208451 (25 bp)
AATGGCACAATGTCCACGACGTGGA
LOC_Os11g47630
Os.51307.1.S1_at--1137--5771Chr11:28208334..28208358 (25 bp)
GACGACGTGCACAATTATAATTTCA
LOC_Os11g47630
Os.51307.1.S1_at--1028--2031Chr11:28208306..28208330 (25 bp)
ACTTTTTGTGAGTGGCTAATGGACA
LOC_Os11g47630
Target Sequence 
TTAAGCTCATTAGTTTACCGACGATGGAAGTGGCCACCAATACGGCGACACGATCGCCGGTGAAGCTAATGCTGGTGCTG
ACACTGTCGCCGGCGAGCAAGGTGATCGCCAAGGGCGGCGGCGGCGTGAAGCGGGTGCACCTCGACGGCGGCGCGTTCCA
GTGCCGGACATGCGGGCGGCGGTTCTCCACGTTCCAGGCTCTCGGCGGCCACCGGACCAGCCACAAGCGGCCGCGGGTGC
GCGCCGACGGCCTTGACCTCCTCCTCGGCGCGCGCCCCGGCAAGCTCGGCGCCGGCGGCGCCTCGACGCCGGTAGTGCAC
CGGTGCGACATGTGCGGCAAGGTGTTCGCCACCGGCCAGGCGCTCGGCGGNCACATGCGCCGCCACCGGCCGCTGGTGAG
TCGTAATGGCACAATGTCCACGACGTGGACGGCGGCGGCGGCGGCGNCGGCGACAATGTCCGGCTCCTCGTCGGAAGAGC
GTGACGACGACGACGACGACGACGTGCACAATTATAATTTCATCCACTTTTTGTGAGTGGCTAATGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis