Browse Element(s) Details


OsAffx.17442.1.S1_at

Description tigr:9636.m04121
TID=OsAffx.17442.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4070011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40650OsAffx.17440.1.S1_at11/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650Os.45902.1.A1_x_at2/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.22442.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.727.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40660Os.53180.1.S1_at11/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.2.S1_x_at7/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.3.S1_x_at6/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.27088.1.A1_x_at4/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40670NANA8+25619077..25620483Zinc knuckle family protein
LOC_Os08g40680Os.4867.1.S1_at11/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40680OsAffx.17441.1.S1_at2/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40690Os.4681.1.S1_at11/118+25629614..25630980Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os08g40700OsAffx.17442.1.S1_at11/118+25632130..25633661expressed protein
LOC_Os08g40710Os.49985.1.S1_at11/118+25634719..25636039retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g40720Os.51655.1.S1_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40720Os.51655.2.S1_x_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40730OsAffx.6096.1.S1_at11/118+25640800..25641639hypothetical protein
LOC_Os08g40740Os.9347.1.S1_at1/118+25645613..25646518Glycosyl hydrolases family 18 protein
LOC_Os08g40750OsAffx.29612.1.S1_at11/118+25648342..25652648hypothetical protein
LOC_Os08g40750Os.25139.1.A1_at5/118+25648342..25652648hypothetical protein
LOC_Os08g40750OsAffx.828.1.S1_x_at1/118+25648342..25652648hypothetical protein
LOC_Os08g40760Os.27691.2.S1_x_at2/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40760Os.27691.1.S1_x_at1/118+25655075..25656004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g40770Os.27691.1.S1_x_at4/118+25656258..25659518retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17442.1.S1_at--221--4731Chr08:25632744..25632768 (25 bp)
GCTGGTCCCTCTTTCAAAGCTGATC
LOC_Os08g40700
OsAffx.17442.1.S1_at--798--8851Chr08:25632764..25632785 (22 bp)
TGATCCCCATCACACAGTCGAGAAG
LOC_Os08g40700
OsAffx.17442.1.S1_at--896--7431Chr08:25633133..25633157 (25 bp)
GTGTCTGAGGCGGACCTCGCCAAGA
LOC_Os08g40700
OsAffx.17442.1.S1_at--495--3751Chr08:25633177..25633201 (25 bp)
CTCCAATGACCGGTACAAGGGCCTG
LOC_Os08g40700
OsAffx.17442.1.S1_at--25--6211Chr08:25633202..25633226 (25 bp)
GAGGCACGATTGGACGAGCTCCACG
LOC_Os08g40700
OsAffx.17442.1.S1_at--837--5891Chr08:25633217..25633241 (25 bp)
GAGCTCCACGGCCATATGGACGAGC
LOC_Os08g40700
OsAffx.17442.1.S1_at--465--5771Chr08:25633238..25633262 (25 bp)
GAGCTGAAGAAATCCCTCCGGGTTA
LOC_Os08g40700
OsAffx.17442.1.S1_at--705--1471Chr08:25633247..25633271 (25 bp)
AAATCCCTCCGGGTTAGCTACACAG
LOC_Os08g40700
OsAffx.17442.1.S1_at--151--1711Chr08:25633278..25633302 (25 bp)
ACCAAACTGCCACTAGTCTGGGAGA
LOC_Os08g40700
OsAffx.17442.1.S1_at--833--3751Chr08:25633456..25633480 (25 bp)
CTGCTTCAGGGCCAATTACCCGGAG
LOC_Os08g40700
OsAffx.17442.1.S1_at--82--3191Chr08:25633468..25633492 (25 bp)
CAATTACCCGGAGCTGGACCTCGAG
LOC_Os08g40700
Target Sequence 
GCTGGTCCCTCTTTCAAAGCTGATCCCCATCACACAGTCGAGAAGAAACTGGAGGTGTCTGAGGCGGACCTCGCCAAGAT
GAAGGAGCTCTACGCCGGCTCCAATGACCGGTACAAGGGCCTGGAGGCACGATTGGACGAGCTCCACGGCCATATGGACG
AGCTGAAGAAATCCCTCCGGGTTAGCTACACAGCCCTCCACCAAACTGCCACTAGTCTGGGAGAAGTGGAGGCTCCTGCT
TTCGGGGACGAGACGTCCATGACGGCGGCCTTGGCGGAACTCGTGACAGTGCTGGAAAGCGTTGTCCCGAAGTATACCAG
CCAAATGAGGGAGACTGCGACCACCGGAGTCCGTATTGGCGCGGCGCATATCCTCGCCTGCTTCAGGGCCAATTACCCGG
AGCTGGACCTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis