Browse Element(s) Details


OsAffx.17441.1.S1_at

Description tigr:9636.m04119
TID=OsAffx.17441.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glycosyl hydrolases family 18, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g406802/11Xylanase inhibitor protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40650OsAffx.17440.1.S1_at11/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650Os.45902.1.A1_x_at2/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.22442.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.727.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40660Os.53180.1.S1_at11/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.2.S1_x_at7/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.3.S1_x_at6/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.27088.1.A1_x_at4/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40670NANA8+25619077..25620483Zinc knuckle family protein
LOC_Os08g40680Os.4867.1.S1_at11/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40680OsAffx.17441.1.S1_at2/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40690Os.4681.1.S1_at11/118+25629614..25630980Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os08g40700OsAffx.17442.1.S1_at11/118+25632130..25633661expressed protein
LOC_Os08g40710Os.49985.1.S1_at11/118+25634719..25636039retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g40720Os.51655.1.S1_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40720Os.51655.2.S1_x_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40730OsAffx.6096.1.S1_at11/118+25640800..25641639hypothetical protein
LOC_Os08g40740Os.9347.1.S1_at1/118+25645613..25646518Glycosyl hydrolases family 18 protein
LOC_Os08g40750OsAffx.29612.1.S1_at11/118+25648342..25652648hypothetical protein
LOC_Os08g40750Os.25139.1.A1_at5/118+25648342..25652648hypothetical protein
LOC_Os08g40750OsAffx.828.1.S1_x_at1/118+25648342..25652648hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17441.1.S1_at--1024--6811Chr08:25626206..25626230 (25 bp)
GTTTGTTACCAAGCTGCCTAACTAT
LOC_Os08g40680
OsAffx.17441.1.S1_at--181--3731Chr08:25626189..25626213 (25 bp)
CTAACTATGGTGGTTTGGCTGTCTA
LOC_Os08g40680
OsAffx.17441.1.S1_at--561--911NONE
AGGCTAATTACACTGACTCAGGCAC
NONE
OsAffx.17441.1.S1_at--925--9631Chr08:25625226..25625250 (25 bp)
TCAGGCACACCAACAGACTCAGCAT
NONE
OsAffx.17441.1.S1_at--677--1531Chr08:25625206..25625230 (25 bp)
AGCATCACCAAGTGTCCCAGTGGAG
NONE
OsAffx.17441.1.S1_at--212--10031Chr08:25625171..25625195 (25 bp)
TAGAACGCCATGAGGTCTCCAGCTG
NONE
OsAffx.17441.1.S1_at--309--10071Chr08:25625084..25625108 (25 bp)
TAGTGCAGAGCGAGATCGGCCACCT
NONE
OsAffx.17441.1.S1_at--94--8451Chr08:25625067..25625091 (25 bp)
GGCCACCTTCCATACAGAGTTGAGA
NONE
OsAffx.17441.1.S1_at--387--9491Chr08:25625036..25625060 (25 bp)
TCTGCTCTTATCCTCGGGTCAGTGA
NONE
OsAffx.17441.1.S1_at--795--5091Chr08:25624978..25625002 (25 bp)
GCACCCACAGCAGGATGTTCTTTTT
NONE
OsAffx.17441.1.S1_at--492--3911Chr08:25624927..25624951 (25 bp)
CTGGCTGAGCTGTGATGAGCACCAA
NONE
Target Sequence 
GTTTGTTACCAAGCTGCCTAACTATGGTGGTTTGGCTGTCTATGATAGGTACTATGATAAGAAGGCTAATTACACTGACT
CAGGCACACCAACAGACTCAGCATCACCAAGTGTCCCAGTGGAGCTGCCCCTCATAGAACGCCATGAGGTCTCCAGCTGC
AAACTCTCCCTTATACCTTCTGCCACCTCCGTCATCTTTGGCCGATCACGCCCTGCACGCCTAGTGCAGAGCGAGATCGG
CCACCTTCCATACAGAGTTGAGATCATAATCTGCTCTTATCCTCGGGTCAGTGACGCCCTCGATGTCTCCTTCTGCGAGC
CTCTCATGCACCCACAGCAGGATGTTCTTTTTTTCCGTGTCGCTGATGGGGATGATTGCTGGCTGAGCTGTGATGAGCAC
CAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis