Browse Element(s) Details


Os.4867.1.S1_at

Description gb:AK064180.1
DB_XREF= gi:32974198
TID=Os.4867.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4867 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-B05, full insert sequence.
FL= gb:AK064180.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4068011/11Xylanase inhibitor protein 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40650OsAffx.17440.1.S1_at11/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650Os.45902.1.A1_x_at2/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.22442.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40650OsAffx.727.1.S1_x_at1/118+25602723..25610337Protein kinase domain containing protein
LOC_Os08g40660Os.53180.1.S1_at11/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.2.S1_x_at7/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.46012.3.S1_x_at6/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40660Os.27088.1.A1_x_at4/118+25612597..25617531retrotransposon protein, putative, unclassified
LOC_Os08g40670NANA8+25619077..25620483Zinc knuckle family protein
LOC_Os08g40680Os.4867.1.S1_at11/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40680OsAffx.17441.1.S1_at2/118+25626018..25627092Xylanase inhibitor protein 2 precursor, putative, expressed
LOC_Os08g40690Os.4681.1.S1_at11/118+25629614..25630980Xylanase inhibitor protein 1 precursor, putative, expressed
LOC_Os08g40700OsAffx.17442.1.S1_at11/118+25632130..25633661expressed protein
LOC_Os08g40710Os.49985.1.S1_at11/118+25634719..25636039retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g40720Os.51655.1.S1_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40720Os.51655.2.S1_x_at11/118+25636971..25638706FAD-binding domain-containing protein, putative, expressed
LOC_Os08g40730OsAffx.6096.1.S1_at11/118+25640800..25641639hypothetical protein
LOC_Os08g40740Os.9347.1.S1_at1/118+25645613..25646518Glycosyl hydrolases family 18 protein
LOC_Os08g40750OsAffx.29612.1.S1_at11/118+25648342..25652648hypothetical protein
LOC_Os08g40750Os.25139.1.A1_at5/118+25648342..25652648hypothetical protein
LOC_Os08g40750OsAffx.828.1.S1_x_at1/118+25648342..25652648hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4867.1.S1_at--445--6751Chr08:25626123..25626147 (25 bp)
GTTAAATGGTTAACGATCGATCGTC
LOC_Os08g40680
Os.4867.1.S1_at--381--811Chr08:25626118..25626142 (25 bp)
ATGGTTAACGATCGATCGTCTTTGT
LOC_Os08g40680
Os.4867.1.S1_at--581--2591Chr08:25626112..25626136 (25 bp)
AACGATCGATCGTCTTTGTTGATGT
LOC_Os08g40680
Os.4867.1.S1_at--840--6391Chr08:25626109..25626133 (25 bp)
GATCGATCGTCTTTGTTGATGTACT
LOC_Os08g40680
Os.4867.1.S1_at--256--10271Chr08:25626098..25626122 (25 bp)
TTTGTTGATGTACTGGCTGAATAAT
LOC_Os08g40680
Os.4867.1.S1_at--993--6271Chr08:25626092..25626116 (25 bp)
GATGTACTGGCTGAATAATTAAAGA
LOC_Os08g40680
Os.4867.1.S1_at--815--9831Chr08:25626073..25626097 (25 bp)
TAAAGAAGATCCCTCGTGTTTGTAA
LOC_Os08g40680
Os.4867.1.S1_at--1035--2731Chr08:25626071..25626095 (25 bp)
AAGAAGATCCCTCGTGTTTGTAATG
LOC_Os08g40680
Os.4867.1.S1_at--899--5331Chr08:25626069..25626093 (25 bp)
GAAGATCCCTCGTGTTTGTAATGTT
LOC_Os08g40680
Os.4867.1.S1_at--159--1291Chr08:25626067..25626091 (25 bp)
AGATCCCTCGTGTTTGTAATGTTGT
LOC_Os08g40680
Os.4867.1.S1_at--312--551Chr08:25626065..25626089 (25 bp)
ATCCCTCGTGTTTGTAATGTTGTGA
LOC_Os08g40680
Target Sequence 
GTTAAATGGTTAACGATCGATCGTCTTTGTTGATGTACTGGCTGAATAATTAAAGAAGATCCCTCGTGTTTGTAATGTTG
TGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4867.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis