Browse Element(s) Details


Os.55350.1.S1_at

Description gb:AK107919.1
DB_XREF= gi:32993128
TID=Os.55350.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55350 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-H02, full insert sequence.
FL= gb:AK107919.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1381011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g13790Os.23798.1.S1_at11/115+7625300..7627505expressed protein
LOC_Os05g13800OsAffx.17848.4.S1_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800OsAffx.17848.4.S1_x_at11/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13800Os.54363.1.S1_at6/115+7628721..7635029transposon protein, putative, Mutator sub-class, expressed
LOC_Os05g13810Os.55350.1.S1_at11/115+7651907..7652569expressed protein
LOC_Os05g13820OsAffx.26872.1.S1_at11/115+7662273..7663148hypothetical protein
LOC_Os05g13830Os.9384.1.S1_at11/115+7664659..7665828hypothetical protein
LOC_Os05g13840OsAffx.26873.1.S1_at11/115+7668950..7669685hypothetical protein
LOC_Os05g13850Os.9384.1.S1_at3/115+7671855..7672616hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55350.1.S1_at--34--8271Chr05:7652198..7652222 (25 bp)
GGCAGAGCCCCGTCAAGCGGCGGTG
LOC_Os05g13810
Os.55350.1.S1_at--550--8351Chr05:7652261..7652285 (25 bp)
GGCGGCAGGCAACGACGACCGTTGT
LOC_Os05g13810
Os.55350.1.S1_at--4--3771Chr05:7652310..7652334 (25 bp)
CTCTCCTCCACTGGATGTGATGGGA
LOC_Os05g13810
Os.55350.1.S1_at--949--1871Chr05:7652381..7652405 (25 bp)
ACGAGGCGGGCTGCGGAGGTATTGA
LOC_Os05g13810
Os.55350.1.S1_at--127--871Chr05:7652405..7652429 (25 bp)
ATGGCGGCAGATTTTTTTCGTGATG
LOC_Os05g13810
Os.55350.1.S1_at--469--7391Chr05:7652424..7652448 (25 bp)
GTGATGTTTTTGTGAATCCCTCTCC
LOC_Os05g13810
Os.55350.1.S1_at--752--10811Chr05:7652433..7652457 (25 bp)
TTGTGAATCCCTCTCCATTGTATAT
LOC_Os05g13810
Os.55350.1.S1_at--55--5271Chr05:7652437..7652461 (25 bp)
GAATCCCTCTCCATTGTATATTTTT
LOC_Os05g13810
Os.55350.1.S1_at--805--7991Chr05:7652493..7652517 (25 bp)
GGATGTTATGAATTGGATCTGTAAT
LOC_Os05g13810
Os.55350.1.S1_at--550--9471Chr05:7652510..7652534 (25 bp)
TCTGTAATGTCAATTAGATCTGTGA
LOC_Os05g13810
Os.55350.1.S1_at--887--7391Chr05:7652531..7652555 (25 bp)
GTGATGTTAATTTGATTTGGGACTT
LOC_Os05g13810
Target Sequence 
GGCAGAGCCCCGTCAAGCGGCGGTGGGCGATGTGGGCGGCGGGCGCCCATGAGGCACGAGGGGGGCGGCAGGCAACGACG
ACCGTTGTGGGAGAGGAGGCAGCGGCAGAGCCCTCTCCTCCACTGGATGTGATGGGAGGGGAGGCATTAGGCGGCGGCGG
GCGATGTGGGCAGCGGGCGATGCACGAGGCGGGCTGCGGAGGTATTGATGGCGGCAGATTTTTTTCGTGATGTTTTTGTG
AATCCCTCTCCATTGTATATTTTTGTTATGTTTTTGTGAATAATTTTGTTGTTGAGGATGTTATGAATTGGATCTGTAAT
GTCAATTAGATCTGTGATGTTAATTTGATTTGGGACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis