Browse Element(s) Details


Os.54363.1.S1_at

Description gb:AK103669.1
DB_XREF= gi:32988878
TID=Os.54363.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135M01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135M01, full insert sequence.
FL= gb:AK103669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4503011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g249806/11Zinc knuckle family protein
LOC_Os05g138006/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os02g345503/11Transposable element protein, putative, MuDR
LOC_Os01g269802/11Transposable element protein, putative, MuDR
LOC_Os01g268562/11Transposable element protein, putative, MuDR
LOC_Os05g320302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45010OsAffx.27426.2.S1_s_at11/116+27215184..27218843expressed protein
LOC_Os06g45010OsAffx.27426.2.S1_at4/116+27215184..27218843expressed protein
LOC_Os06g45000Os.15777.1.S1_at10/116+27218540..27222020Ubiquitin-conjugating enzyme E2S, putative, expressed
LOC_Os06g45020OsAffx.5110.1.S1_at11/116+27225622..27231918Leucine Rich Repeat family protein, expressed
LOC_Os06g45030Os.54363.1.S1_at11/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45030OsAffx.17848.4.S1_x_at1/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45040OsAffx.15932.1.S1_at10/116+27252386..27254042B-box zinc finger family protein
LOC_Os06g45050Os.54880.1.S1_at11/116+27256070..27260258Clathrin assembly protein, putative, expressed
LOC_Os06g45060Os.53705.1.S1_at11/116+27260314..27261597expressed protein
LOC_Os06g45070OsAffx.28110.1.S1_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45070Os.6619.1.S1_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45070Os.6619.1.S1_x_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45080Os.25345.2.S1_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45080Os.25345.1.S1_x_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45090Os.46304.1.S1_a_at11/116+27270985..27274167expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54363.1.S1_at--839--7011Chr06:27242127..27242151 (25 bp)
GTACATCTTCAACCATGGAACCTAT
LOC_Os06g45030
Os.54363.1.S1_at--70--1711Chr06:27242116..27242140 (25 bp)
ACCATGGAACCTATGCAACAACGTG
LOC_Os06g45030
Os.54363.1.S1_at--753--8135Chr05:18580436..18580460 (25 bp)
GGAAACCTGCAGTAGTTATAACCTA
LOC_Os05g32030
Os.54363.1.S1_at--120--6955Chr05:7633472..7633496 (25 bp)
GTAGTTATAACCTACACTGTCCGGT
LOC_Os05g13800
Os.54363.1.S1_at--834--2634Chr05:7633480..7633504 (25 bp)
AACCTACACTGTCCGGTTATTTATG
LOC_Os05g13800
Os.54363.1.S1_at--111--3975Chr05:7633493..7633517 (25 bp)
CGGTTATTTATGTTCGGTCATGATA
LOC_Os05g13800
Os.54363.1.S1_at--1082--6492Chr10:5015187..5015209 (22 bp)
GATATGTTCGCTGCATGACGTTGTA
NONE
Os.54363.1.S1_at--765--4134Chr05:7633523..7633546 (24 bp)
CGCTGCATGACGTTGTATTTCAATA
LOC_Os05g13800
Os.54363.1.S1_at--917--6853Chr01:15359142..15359163 (22 bp)
GTTTGTAACGTTTGTAATCCTATTG
LOC_Os01g26980
Os.54363.1.S1_at--626--7077Chr05:7633552..7633670 (25 bp)
GTAATCCTATTGTTGTACTATTTAT
LOC_Os05g13800
Os.54363.1.S1_at--1106--213Chr01:15359319..15359343 (25 bp)
ATATTGCTCGAGTTTGTACTTGTAC
LOC_Os01g26980
Target Sequence 
GTACATCTTCAACCATGGAACCTATGCAACAACGTGCGAGGAGAAATAGAAGGGGCTCTCAGGGTGCTCACGATAGGGAG
GAAGGAAACCTGCAGTAGTTATAACCTACACTGTCCGGTTATTTATGTTCGGTCATGATATGTTCGCTGCATGACGTTGT
ATTTCAATAAGTTTGTAATATGTTAGTCAATAAGTATGTGTAATATTTATTTTATTATGGTAATGTTGTAAGATTTTATT
GTAAGGTGTTACCAAGTTTGTAACGTTTGTAATCCTATTGTTGTACTATTTATTTCAATGATATTGCTCGAGTTTGTACT
TGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis