Browse Element(s) Details

Os.25345.1.S1_x_at

Description

gb:AK067348.1
DB_XREF= gi:32977366
TID=Os.25345.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105D20, full insert sequence.
FL= gb:AK067348.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45080	11/11	RabGAP/TBC domain-containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45030	Os.54363.1.S1_at	11/11	6	+	27241826..27246640	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45030	OsAffx.17848.4.S1_x_at	1/11	6	+	27241826..27246640	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45040	OsAffx.15932.1.S1_at	10/11	6	+	27252386..27254042	B-box zinc finger family protein
LOC_Os06g45050	Os.54880.1.S1_at	11/11	6	+	27256070..27260258	Clathrin assembly protein, putative, expressed
LOC_Os06g45060	Os.53705.1.S1_at	11/11	6	+	27260314..27261597	expressed protein
LOC_Os06g45070	OsAffx.28110.1.S1_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45070	Os.6619.1.S1_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45070	Os.6619.1.S1_x_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45080	Os.25345.2.S1_at	11/11	6	+	27264307..27268896	RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45080	Os.25345.1.S1_x_at	11/11	6	+	27264307..27268896	RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45090	Os.46304.1.S1_a_at	11/11	6	+	27270985..27274167	expressed protein
LOC_Os06g45100	Os.53365.1.S1_at	11/11	6	+	27274529..27277847	cryptochrome dash, putative, expressed
LOC_Os06g45110	Os.17942.1.S1_at	11/11	6	+	27278953..27283979	expressed protein
LOC_Os06g45120	Os.11821.1.S2_at	11/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45120	Os.11821.1.S1_at	10/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45130	Os.50560.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein
LOC_Os06g45130	OsAffx.28111.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.25345.1.S1_x_at--483--733	1	Chr06:27265412..27265436 (25 bp)	GTGCATTGGTCGATTATCAGCAATC	LOC_Os06g45080
Os.25345.1.S1_x_at--238--1029	1	Chr06:27265329..27265353 (25 bp)	TTTGCTGTGCATGAAGTTGGCCGCA	LOC_Os06g45080
Os.25345.1.S1_x_at--1005--547	1	Chr06:27265293..27265317 (25 bp)	GAACTAGGTTCAAGCTCAGATGTGG	LOC_Os06g45080
Os.25345.1.S1_x_at--102--665	1	Chr06:27264777..27264801 (25 bp)	GTTGTTTCAACCAAATTTGCACTCT	LOC_Os06g45080
Os.25345.1.S1_x_at--726--1027	1	Chr06:27264762..27264786 (25 bp)	TTTGCACTCTACCTCACTGGATAAA	LOC_Os06g45080
Os.25345.1.S1_x_at--1069--233	1	Chr06:27264695..27264719 (25 bp)	AAAGCAGCTCTAGAAGGTCTCAAGA	LOC_Os06g45080
Os.25345.1.S1_x_at--1036--735	1	Chr06:27264664..27264688 (25 bp)	GTGAACTTCTACGACGAATCTAACG	LOC_Os06g45080
Os.25345.1.S1_x_at--332--609	1	Chr06:27264616..27264640 (25 bp)	GAGTAGCTCTAACTACCTGTTCCAT	LOC_Os06g45080
Os.25345.1.S1_x_at--1134--229	1	Chr06:27264514..27264538 (25 bp)	AAATGGTCCAATTGCTTTGTAGATA	LOC_Os06g45080
Os.25345.1.S1_x_at--1078--687	1	Chr06:27264450..27264474 (25 bp)	GTATATTTGAACAACTCTTGGCTGA	LOC_Os06g45080
Os.25345.1.S1_x_at--1096--385	1	Chr06:27264429..27264453 (25 bp)	CTGATTTTGAAGTGCTGCTGGCCTT	LOC_Os06g45080

Target Sequence

GTGCATTGGTCGATTATCAGCAATCACAACAGAATAAACCGTGTTCTGTTAATGGGAAATCAGAGGTAAAATATCAACAA
AATTTTGCTGTGCATGAAGTTGGCCGCAAAGAAACATTTGAACTAGGTTCAAGCTCAGATGTGGCTGATAAAGAGCTACT
TGGAACATTAAGGTTACTTGGGGAATCTATGGTTGAAAACATTGAGGTTATTGACTTGTTGTTTCAACCAAATTTGCACT
CTACCTCACTGGATAAATCAGAGGAAATTGTTCTTGGTAGTATAGAGCAAGCTAAAGCAAAAGCAGCTCTAGAAGGTCTC
AAGAAGATTAGTGAACTTCTACGACGAATCTAACGTGTATATTTGTGGAAACTCGCAAGAGTAGCTCTAACTACCTGTTC
CATACTTCCATGATATATTTTCATTTTTTTTCACACAAGTTCTAACTTAACAGAATTGTTGTACTGAACGAACAATGGAT
AAATGGTCCAATTGCTTTGTAGATATTTTGTACATGTTCCATGTAAGCTGATGAAATCATCACTGTATATTTGAACAACT
CTTGGCTGATTTTGAAGTGCTGCTGGCCTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis