Browse Element(s) Details

Os.46304.1.S1_a_at

Description

gb:CB668496
DB_XREF= gi:29672221
DB_XREF=OSJNEd16G01.r
CLONE=OSJNEd16G01
TID=Os.46304.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.46304 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45090	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45030	Os.54363.1.S1_at	11/11	6	+	27241826..27246640	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45030	OsAffx.17848.4.S1_x_at	1/11	6	+	27241826..27246640	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45040	OsAffx.15932.1.S1_at	10/11	6	+	27252386..27254042	B-box zinc finger family protein
LOC_Os06g45050	Os.54880.1.S1_at	11/11	6	+	27256070..27260258	Clathrin assembly protein, putative, expressed
LOC_Os06g45060	Os.53705.1.S1_at	11/11	6	+	27260314..27261597	expressed protein
LOC_Os06g45070	OsAffx.28110.1.S1_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45070	Os.6619.1.S1_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45070	Os.6619.1.S1_x_at	11/11	6	+	27261818..27263838	CSL zinc finger family protein, expressed
LOC_Os06g45080	Os.25345.2.S1_at	11/11	6	+	27264307..27268896	RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45080	Os.25345.1.S1_x_at	11/11	6	+	27264307..27268896	RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45090	Os.46304.1.S1_a_at	11/11	6	+	27270985..27274167	expressed protein
LOC_Os06g45100	Os.53365.1.S1_at	11/11	6	+	27274529..27277847	cryptochrome dash, putative, expressed
LOC_Os06g45110	Os.17942.1.S1_at	11/11	6	+	27278953..27283979	expressed protein
LOC_Os06g45120	Os.11821.1.S2_at	11/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45120	Os.11821.1.S1_at	10/11	6	+	27285311..27291850	Vacuolar ATP synthase catalytic subunit A, putative, expressed
LOC_Os06g45130	Os.50560.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein
LOC_Os06g45130	OsAffx.28111.1.S1_at	11/11	6	+	27293151..27294057	hypothetical protein
LOC_Os06g45140	Os.1503.1.S1_at	11/11	6	+	27298917..27301107	bZIP transcription factor family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.46304.1.S1_a_at--866--355	1	Chr06:27273687..27273711 (25 bp)	CATACTTTACGGGATCTCCACCAGT	LOC_Os06g45090
Os.46304.1.S1_a_at--200--243	1	Chr06:27273765..27273789 (25 bp)	AAAACGTTGATCAGTCGCTTAGCAT	LOC_Os06g45090
Os.46304.1.S1_a_at--633--721	1	Chr06:27273778..27273802 (25 bp)	GTCGCTTAGCATTCCTATACCAACA	LOC_Os06g45090
Os.46304.1.S1_a_at--153--107	1	Chr06:27273804..27273828 (25 bp)	AGGGTTGCAATGTTCGTTACTGTGT	LOC_Os06g45090
Os.46304.1.S1_a_at--759--1043	1	Chr06:27273865..27273889 (25 bp)	TTATGAGCTTCATGACCGCTGGCAA	LOC_Os06g45090
Os.46304.1.S1_a_at--1077--205	1	Chr06:27273917..27273941 (25 bp)	ACATTCCGGCTTTTGACATTAGTTG	LOC_Os06g45090
Os.46304.1.S1_a_at--9--877	1	Chr06:27273940..27273964 (25 bp)	TGTAGTTGTAACTTTGCTTGCCTCT	LOC_Os06g45090
Os.46304.1.S1_a_at--852--491	1	Chr06:27273955..27273979 (25 bp)	GCTTGCCTCTTCAAGGCCAATTTGT	LOC_Os06g45090
Os.46304.1.S1_a_at--650--917	1	Chr06:27274007..27274031 (25 bp)	TGCCGTTTTCAAGTTTTGTGCCGTT	LOC_Os06g45090
Os.46304.1.S1_a_at--490--713	1	Chr06:27274032..27274056 (25 bp)	GTCATCGGCAGTGGTGTACATATCT	LOC_Os06g45090
Os.46304.1.S1_a_at--668--285	1	Chr06:27274101..27274125 (25 bp)	AAGTCTGTCAAACCTATGTTGCTGA	LOC_Os06g45090

Target Sequence

CATACTTTACGGGATCTCCACCAGTTCGAGCAAGCAATCCACTTGTACATGATACACAGTTCTGTGCATGGAAGCTGCAA
AACGTTGATCAGTCGCTTAGCATTCCTATACCAACAAAGGGTTGCAATGTTCGTTACTGTGTGAGGNAAGGATCTATTAC
AAAGGCTTGAAGCTACATTTATGAGCTTCATGACCGCTGGCAACCAGACCTCANAGGACATGCTTGGTNAACATTCCGGC
TTTTGACATTAGTTGTAGTTGTAACTTTGCTTGCCTCTTCAAGGCCAATTTGTACATATGANTTATCACCCTCTANAANC
TGCCGTTTTCAAGTTTTGTGCCGTTGTCATCGGCAGTGGTGTACATATCTTTTGTGTTCAGTTTTGTCGNCTGTGAANNT
AGTTTTGGCAAATAAAGTCTGTCAAACCTATGTTGCTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis