Browse Element(s) Details


Os.54880.1.S1_at

Description gb:AK106992.1
DB_XREF= gi:32992201
TID=Os.54880.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-B03, full insert sequence.
FL= gb:AK106992.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4505011/11Clathrin assembly protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45020OsAffx.5110.1.S1_at11/116+27225622..27231918Leucine Rich Repeat family protein, expressed
LOC_Os06g45030Os.54363.1.S1_at11/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45030OsAffx.17848.4.S1_x_at1/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45040OsAffx.15932.1.S1_at10/116+27252386..27254042B-box zinc finger family protein
LOC_Os06g45050Os.54880.1.S1_at11/116+27256070..27260258Clathrin assembly protein, putative, expressed
LOC_Os06g45060Os.53705.1.S1_at11/116+27260314..27261597expressed protein
LOC_Os06g45070OsAffx.28110.1.S1_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45070Os.6619.1.S1_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45070Os.6619.1.S1_x_at11/116+27261818..27263838CSL zinc finger family protein, expressed
LOC_Os06g45080Os.25345.2.S1_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45080Os.25345.1.S1_x_at11/116+27264307..27268896RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os06g45090Os.46304.1.S1_a_at11/116+27270985..27274167expressed protein
LOC_Os06g45100Os.53365.1.S1_at11/116+27274529..27277847cryptochrome dash, putative, expressed
LOC_Os06g45110Os.17942.1.S1_at11/116+27278953..27283979expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54880.1.S1_at--759--5611Chr06:27259696..27259720 (25 bp)
GACAAGCTACTGCTAGACAGCCTGT
LOC_Os06g45050
Os.54880.1.S1_at--762--8251Chr06:27259768..27259792 (25 bp)
GGCAGCGTTGCAGGAAACCCATTTG
LOC_Os06g45050
Os.54880.1.S1_at--521--5191Chr06:27259810..27259834 (25 bp)
GCAATGTCTAATAACTTCGCGCCAC
LOC_Os06g45050
Os.54880.1.S1_at--993--4551Chr06:27259828..27259852 (25 bp)
GCGCCACCGTCGAATGTTCAGTTAG
LOC_Os06g45050
Os.54880.1.S1_at--674--3291Chr06:27259924..27259948 (25 bp)
CAAATGGTGACGTTGCCGCCGCAAA
LOC_Os06g45050
Os.54880.1.S1_at--1087--3571Chr06:27260012..27260036 (25 bp)
CATTTGGTGATCCATTCGGTGGCCT
LOC_Os06g45050
Os.54880.1.S1_at--683--6671Chr06:27260038..27260062 (25 bp)
GTTGCGATGGCTAATCCTCCAAAGC
LOC_Os06g45050
Os.54880.1.S1_at--680--7171Chr06:27260080..27260104 (25 bp)
GTCTGAATTCGCACATTCTTTTCTG
LOC_Os06g45050
Os.54880.1.S1_at--1131--6531Chr06:27260116..27260140 (25 bp)
GATTTTTGATCGTATCTCCTTTTCC
LOC_Os06g45050
Os.54880.1.S1_at--323--5951Chr06:27260150..27260174 (25 bp)
GAGCAACTTGTATAGTCCGACGATT
LOC_Os06g45050
Os.54880.1.S1_at--511--6531Chr06:27260171..27260195 (25 bp)
GATTTTCAATACTGCATCCTGACGA
LOC_Os06g45050
Target Sequence 
GACAAGCTACTGCTAGACAGCCTGTATGAAGATGAAGCAAGGAGGCAGCAAATAGCCAGTGCAACCTACAACGGCAGCGT
TGCAGGAAACCCATTTGATCCCAACGATCCATTTGCAATGTCTAATAACTTCGCGCCACCGTCGAATGTTCAGTTAGCCA
TGATGCAACAGCAGCATCAGGATTATCAGGAGCAGCAGCAGCAGTATTATCAGATTCAGCAACAGCAGCAAATGGTGACG
TTGCCGCCGCAAACATACCATCAGCAGCAGCAGACACAGTATTCTGCTCTTCCTTCTCATGATGGATTATCCAATCCATT
TGGTGATCCATTCGGTGGCCTTGTTGCGATGGCTAATCCTCCAAAGCAAAACAATTCAAATTTAGTCTGAATTCGCACAT
TCTTTTCTGTATCACCCTCCGATTTTTGATCGTATCTCCTTTTCCAATTTTGAGGAGCAACTTGTATAGTCCGACGATTT
TCAATACTGCATCCTGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis