Browse Element(s) Details


OsAffx.5110.1.S1_at

Description tigr:9634.m04364
TID=OsAffx.5110.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4502011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44970Os.53995.1.S1_at11/116+27199811..27203614Auxin efflux carrier component 4, putative, expressed
LOC_Os06g44980Os.57188.1.S1_at11/116+27208779..27209290expressed protein
LOC_Os06g44990NANA6+27213547..27214813transposon protein, putative, Pong sub-class
LOC_Os06g45010OsAffx.27426.2.S1_s_at11/116+27215184..27218843expressed protein
LOC_Os06g45010OsAffx.27426.2.S1_at4/116+27215184..27218843expressed protein
LOC_Os06g45000Os.15777.1.S1_at10/116+27218540..27222020Ubiquitin-conjugating enzyme E2S, putative, expressed
LOC_Os06g45020OsAffx.5110.1.S1_at11/116+27225622..27231918Leucine Rich Repeat family protein, expressed
LOC_Os06g45030Os.54363.1.S1_at11/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45030OsAffx.17848.4.S1_x_at1/116+27241826..27246640transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g45040OsAffx.15932.1.S1_at10/116+27252386..27254042B-box zinc finger family protein
LOC_Os06g45050Os.54880.1.S1_at11/116+27256070..27260258Clathrin assembly protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0010059biological_processpositive regulation of atrichoblast fate
GO:0010063biological_processpositive regulation of trichoblast fate
GO:0048437biological_processfloral organ development
GO:0048481biological_processovule development
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5110.1.S1_at--980--10051Chr06:27230293..27230317 (25 bp)
TAGTACACTGTCATGGAATGCTCGC
LOC_Os06g45020
OsAffx.5110.1.S1_at--721--9231Chr06:27230319..27230343 (25 bp)
TCCAGGTTGCTCTTGGTTCAGGAAA
LOC_Os06g45020
OsAffx.5110.1.S1_at--122--9231Chr06:27230452..27230476 (25 bp)
TCCAGCCTCCAATTGTGCATCAGAA
LOC_Os06g45020
OsAffx.5110.1.S1_at--583--7331Chr06:27230466..27230490 (25 bp)
GTGCATCAGAACTTTGAACCGGCTA
LOC_Os06g45020
OsAffx.5110.1.S1_at--268--8971Chr06:27230480..27230504 (25 bp)
TGAACCGGCTAATGTACTCCTTGAT
LOC_Os06g45020
OsAffx.5110.1.S1_at--878--6611Chr06:27230549..27230573 (25 bp)
GTTGGCATCAAGTTCTGTCACTCAG
LOC_Os06g45020
OsAffx.5110.1.S1_at--195--5471Chr06:27231004..27231028 (25 bp)
GAACTATGAACCACCGGAATTCCGG
LOC_Os06g45020
OsAffx.5110.1.S1_at--113--6791Chr06:27231295..27231319 (25 bp)
GTTAGATGGGCCAATTCTCAGCTTC
LOC_Os06g45020
OsAffx.5110.1.S1_at--112--3491Chr06:27231339..27231363 (25 bp)
CAGGATGGTGGACCCTTCTATACAA
LOC_Os06g45020
OsAffx.5110.1.S1_at--138--5571Chr06:27231378..27231402 (25 bp)
GAAAGCACTGTCACGATTTGCTGAC
LOC_Os06g45020
OsAffx.5110.1.S1_at--458--9531Chr06:27231407..27231587 (25 bp)
TCAGCGGGTGTATCCGGGAACCACA
LOC_Os06g45020
Target Sequence 
TAGTACACTGTCATGGAATGCTCGCCTCCAGGTTGCTCTTGGTTCAGGAAAGGCCTTAGAGTATCTCCATGAAAGCTTCC
AGCCTCCAATTGTGCATCAGAACTTTGAACCGGCTAATGTACTCCTTGATAATAAATTTTCAGTGCGTGTTGCTGAATGT
GGACTAGAAAAATTGTTGGCATCAAGTTCTGTCACTCAGTTGGCAGATCGAATGCATTCACTGTTGAACTATGAACCACC
GGAATTCCGGGAATCTGGGATAGTTACAGAACAAGGTGATGTTTACAGTTTTGGAGTAGTGATGCTAGAAATTCTTACTG
GGCGTAAACCATACGACAGTTCACTCCCACGTGCTGAGCAACATCTTGTTAGATGGGCCAATTCTCAGCTTCATGACATA
GAATCACTGTCCAGGATGGTGGACCCTTCTATACAAGGGCAATGTTCTGAGAAAGCACTGTCACGATTTGCTGACATAAT
CAGCGGGTGTATCCGGGAACCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5110.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis