Browse Element(s) Details


Os.57188.1.S1_at

Description gb:AK111110.1
DB_XREF= gi:32996319
TID=Os.57188.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57188 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-A06, full insert sequence.
FL= gb:AK111110.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4498011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44950NANA6+27183368..27189523retrotransposon protein, putative, unclassified
LOC_Os06g44960NANA6+27190152..27193442retrotransposon protein, putative, unclassified
LOC_Os06g44970Os.53995.1.S1_at11/116+27199811..27203614Auxin efflux carrier component 4, putative, expressed
LOC_Os06g44980Os.57188.1.S1_at11/116+27208779..27209290expressed protein
LOC_Os06g44990NANA6+27213547..27214813transposon protein, putative, Pong sub-class
LOC_Os06g45010OsAffx.27426.2.S1_s_at11/116+27215184..27218843expressed protein
LOC_Os06g45010OsAffx.27426.2.S1_at4/116+27215184..27218843expressed protein
LOC_Os06g45000Os.15777.1.S1_at10/116+27218540..27222020Ubiquitin-conjugating enzyme E2S, putative, expressed
LOC_Os06g45020OsAffx.5110.1.S1_at11/116+27225622..27231918Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57188.1.S1_at--1029--911Chr06:27209227..27209251 (25 bp)
AGGCTAGCTACTACCACCTGAGTTT
LOC_Os06g44980
Os.57188.1.S1_at--150--9991Chr06:27209216..27209240 (25 bp)
TACCACCTGAGTTTGCTGTTGCTGT
LOC_Os06g44980
Os.57188.1.S1_at--126--6231Chr06:27209060..27209084 (25 bp)
GAGGCCAAGTGGGTGCTCTGCTTCC
LOC_Os06g44980
Os.57188.1.S1_at--883--4791Chr06:27209031..27209055 (25 bp)
GCTCTGCCTCAACAACAAGCGGAGG
LOC_Os06g44980
Os.57188.1.S1_at--93--2471Chr06:27209018..27209042 (25 bp)
AACAAGCGGAGGTTCTCCTGCACCG
LOC_Os06g44980
Os.57188.1.S1_at--372--1811Chr06:27208969..27208993 (25 bp)
ACCCCGCAATTGTCCATGACTAGTA
LOC_Os06g44980
Os.57188.1.S1_at--103--6951Chr06:27208947..27208971 (25 bp)
GTAGTAGTAGCGACCTCTCTTTCTC
LOC_Os06g44980
Os.57188.1.S1_at--93--10391Chr06:27208892..27208916 (25 bp)
TTTTCTTTTCCCCTGATTCGGAGAT
LOC_Os06g44980
Os.57188.1.S1_at--333--111Chr06:27208877..27208901 (25 bp)
ATTCGGAGATTTGTCGTCGTCTATC
LOC_Os06g44980
Os.57188.1.S1_at--309--10051Chr06:27208819..27208843 (25 bp)
TAGATCTGGAACTAGCTGCTTCTTT
LOC_Os06g44980
Os.57188.1.S1_at--960--1591Chr06:27208806..27208830 (25 bp)
AGCTGCTTCTTTCCCAGCGAGAAGA
LOC_Os06g44980
Target Sequence 
AGGCTAGCTACTACCACCTGAGTTTGCTGTTGCTGTTGCTGTTGTTGCATGCGGCTGTGACGGCGGCGGCGGAGATGATG
TGCGGGAAGGAGGAGAAGCTGCTCGGGGTGCAGAAGGCGCCGGGGAGTTGCCCGTACTGCGGCGGAGGGGTGGCGGCGAC
GGACGTNGAGGCCAAGTGGGTGCTCTGCTTCCTCCCGCTCTGCCTCAACAACAAGCGGAGGTTCTCCTGCACCGCCTGCA
ACCGCCGCCTCGTCTCCTACCCCGCAATTGTCCATGACTAGTAGTAGTAGCGACCTCTCTTTCTCTTCTCTTCCTTTTNC
TTTTCTTTTGTTTTATTTTCTTTTCCCCTGATTCGGAGATTTGTCGTCGTCTATCTTCTCCGGGAAGGTGATTTGATAAA
TTCTGTTCTAGATCTGGAACTAGCTGCTTCTTTCCCAGCGAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57188.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis