Browse Element(s) Details


OsAffx.27426.2.S1_s_at

Description tigr:9634.m00177
TID=OsAffx.27426.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0271011/11hypothetical protein
LOC_Os06g4501011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02660OsAffx.27424.1.S1_at11/116+946958..948607hypothetical protein
LOC_Os06g02670OsAffx.27430.1.S1_at5/116+951808..952278hypothetical protein
LOC_Os06g02680Os.52461.1.S1_at1/116+958935..961222hypothetical protein
LOC_Os06g02680OsAffx.14477.1.S1_at1/116+958935..961222hypothetical protein
LOC_Os06g02690OsAffx.27425.1.S1_at11/116+962221..962906hypothetical protein
LOC_Os06g02700OsAffx.2147.1.S1_at2/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.26082.1.S1_at1/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.26082.1.S1_x_at1/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02700OsAffx.30486.1.S1_at1/116+965651..969609retrotransposon protein, putative, unclassified
LOC_Os06g02710OsAffx.27426.2.S1_s_at11/116+970746..973333hypothetical protein
LOC_Os06g02710OsAffx.27426.2.S1_at11/116+970746..973333hypothetical protein
LOC_Os06g02720NANA6+973706..975161transposon protein, putative, Pong sub-class
LOC_Os06g02730Os.51195.1.S1_at11/116+977317..978766nucleoid DNA-binding protein cnd41, putative, expressed
LOC_Os06g02740NANA6+989762..992282Zinc knuckle family protein
LOC_Os06g02750Os.55711.1.S1_at1/116+997123..1001420retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27426.2.S1_s_at--182--8172Chr06:972795..972819 (25 bp)
GGAACAATAAGTTTCTTGAGCTAAA
LOC_Os06g02710
OsAffx.27426.2.S1_s_at--509--392Chr06:972829..972853 (25 bp)
ATCACCTGATCGAATGGAACCTCCT
LOC_Os06g02710
OsAffx.27426.2.S1_s_at--95--5292Chr06:972840..972864 (25 bp)
GAATGGAACCTCCTTCAACTCAAGG
LOC_Os06g02710
OsAffx.27426.2.S1_s_at--728--2532Chr06:972856..972880 (25 bp)
AACTCAAGGCCATACTGTAGCCGGC
LOC_Os06g02710
OsAffx.27426.2.S1_s_at--96--6972Chr06:972872..972896 (25 bp)
GTAGCCGGCCATGCAGAATCTGGGA
LOC_Os06g02710
OsAffx.27426.2.S1_s_at--664--1232Chr06:972991..973015 (25 bp)
AGTTGAAGTCCTCCAGCGGTTGCAG
LOC_Os06g02710
OsAffx.27426.2.S1_s_at--246--7252Chr06:972998..973022 (25 bp)
GTCCTCCAGCGGTTGCAGGAGAAAT
LOC_Os06g02710
OsAffx.27426.2.S1_s_at--332--1452Chr06:973026..973050 (25 bp)
AGAAGACCGAACTGAAGCAAGACCA
LOC_Os06g02710
OsAffx.27426.2.S1_s_at--549--1372Chr06:973045..973069 (25 bp)
AGACCAGCAGATGGTTGAAATCCTT
LOC_Os06g02710
OsAffx.27426.2.S1_s_at--518--5732Chr06:973183..973207 (25 bp)
GACTGAGGCTCAACTGATGTCAGCT
LOC_Os06g02710
OsAffx.27426.2.S1_s_at--569--7112Chr06:973201..973225 (25 bp)
GTCAGCTGAGTCTAGTATTATGTCC
LOC_Os06g02710
Target Sequence 
GGAACAATAAGTTTCTTGAGCTAAACAACTCTACATCACCTGATCGAATGGAACCTCCTTCAACTCAAGGCCATACTGTA
GCCGGCCATGCAGAATCTGGGAATGAGAATATAGACACAGCACGGCCTGAGGGTAGGGATAGTGCGAAGAGGCGTAGATC
GAAGAGCTATGCAGAGACATCATCATCTAGTACAGCAGTTGAAGTCCTCCAGCGGTTGCAGGAGAAATCAGAGAAGACCG
AACTGAAGCAAGACCAGCAGATGGTTGAAATCCTTAGTAGGAAGGACGGAAAAATTAAAATTCAGAGGGATCTTTTCAAC
CTTCAGAAGAAGCATATGAAGATGAGTGTGAAGCAGCACAAGAAGGAAAATGAGATTAGGGAGAAGCAGACTGAGGCTCA
ACTGATGTCAGCTGAGTCTAGTATTATGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27426.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis