Browse Element(s) Details


OsAffx.27430.1.S1_at

Description tigr:9634.m00190
TID=OsAffx.27430.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0284011/11Harpin-induced protein 1 containing protein
LOC_Os06g026705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g02800OsAffx.27428.1.S1_at11/116+1024099..1024966expressed protein
LOC_Os06g02810OsAffx.27429.1.S1_at11/116+1027765..1028430hypothetical protein
LOC_Os06g02820Os.9332.2.S1_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02820Os.9332.2.S1_x_at1/116+1029149..1032644transposon protein, putative, unclassified
LOC_Os06g02830Os.52245.1.S1_at11/116+1038994..1041720expressed protein
LOC_Os06g02830OsAffx.7756.1.S1_at1/116+1038994..1041720expressed protein
LOC_Os06g02840OsAffx.27430.1.S1_at11/116+1043888..1044487Harpin-induced protein 1 containing protein
LOC_Os06g02850Os.52461.1.S1_at11/116+1045030..1047727expressed protein
LOC_Os06g02850OsAffx.14477.1.S1_at1/116+1045030..1047727expressed protein
LOC_Os06g02860NANA6+1050966..1051606hypothetical protein
LOC_Os06g02870OsAffx.15237.1.S1_at11/116+1052171..1055079hypothetical protein
LOC_Os06g02880OsAffx.29663.1.S1_at8/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.380.1.S1_at4/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880Os.27345.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02880OsAffx.13325.1.S1_at1/116+1055494..1060323retrotransposon protein, putative, unclassified
LOC_Os06g02900Os.14214.1.S1_at11/116+1062537..1065533Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27430.1.S1_at--570--892Chr06:1044114..1044138 (25 bp)
AGGCGCTGGACGTCATGCTCTGGTA
LOC_Os06g02840
OsAffx.27430.1.S1_at--585--8532Chr06:1044120..1044144 (25 bp)
TGGACGTCATGCTCTGGTACGGCAC
LOC_Os06g02840
OsAffx.27430.1.S1_at--548--8572Chr06:1044134..1044158 (25 bp)
TGGTACGGCACCACCGACTACATCG
LOC_Os06g02840
OsAffx.27430.1.S1_at--720--4152Chr06:1044228..1044252 (25 bp)
CGCGCAACGCGACGGCCGTGGAGGT
LOC_Os06g02840
OsAffx.27430.1.S1_at--658--1832Chr06:1044263..1044287 (25 bp)
ACGCTGGACGACAGGTTTGTGCAGG
LOC_Os06g02840
OsAffx.27430.1.S1_at--752--8351Chr06:1044365..1044389 (25 bp)
GGCGTCGTGTACACCAGGCCGTACA
LOC_Os06g02840
OsAffx.27430.1.S1_at--216--1732Chr06:1044377..1044401 (25 bp)
ACCAGGCCGTACAACGTCAGGGTGT
LOC_Os06g02840
OsAffx.27430.1.S1_at--429--8412Chr06:1044381..1044405 (25 bp)
GGCCGTACAACGTCAGGGTGTCCTG
LOC_Os06g02840
OsAffx.27430.1.S1_at--470--2212Chr06:1044387..1044411 (25 bp)
ACAACGTCAGGGTGTCCTGCAGCGA
LOC_Os06g02840
OsAffx.27430.1.S1_at--983--9632Chr06:1044393..1044417 (25 bp)
TCAGGGTGTCCTGCAGCGACGTCTA
LOC_Os06g02840
OsAffx.27430.1.S1_at--154--5072Chr06:1044405..1044429 (25 bp)
GCAGCGACGTCTACTTCGTCGTCGC
LOC_Os06g02840
Target Sequence 
AGGCGCTGGACGTCATGCTCTGGTACGGCACCACCGACTACATCGAGACCAACACCAGCCTCCTCCTCGTCGGCCTCGCC
GCCGCCGACGAGGCGGCGCTGCTCCTGCAGCCGCCGCGCAACGCGACGGCCGTGGAGGTGACGGCGCGGACGCTGGACGA
CAGGTTTGTGCAGGAGATCGTCGCCGGCGAAGGGAGGAGAACCGGGCNGTNNAANNNNGNNNTNGNNNNTNANNNNNGGN
NNNAGGTCGCCGGCGTCGTGTACACCAGGCCGTACAACGTCAGGGTGTCCTGCAGCGACGTCTACTTCGTCGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis